RNA id: XM_026928336.2


Basic Information

Item Value
RNA id XM_026928336.2
length 4382
RNA type mRNA
GC content 0.44
exon number 3
gene id pcsk1nl
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4233994 ~ 4247657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccctccctccatCTGGATCACTCCATCTGTGGTCCGGAGCTCAGTGGCGGCGTATCTCTCTGTCATAAGGGGCAGCTTCATTCTCTCCTGCAGGATGTCGGGCCCTCGCACCAGCTCCATACTGCTCCTCTTCTGCGTGGCTTTCCTCCAGAATCCGCTCCTGGAGgccaagccTCTCTCTGCCATGCATGGGGGCGGAGCTGCACGCCTTCGTCGTGACCTGCGTGATGCACTGCCTTACGAGGCTCAGATGATGTCATACCCTCCTGCCGGCTTCAATGGACGGGGCAACGATCTGTACTACCAGCCAGAGGCCTTGAGAGCACAGGGGCTGGGCCACGCCCTGCATCGCCTGGAGAACGACCAGAGGCAGGAGCAGGAGGCAGCCTACCTAGCAGGTTTACTGCGCCTCCTGAGTGAGGCAGAGAGTAAAGGCCAAGCAAGaccagaggaagaggaagagcaggTGGAAGGTGATTTCCAGGAATCATACCCTCCAGATTATGATGAGACAGAGCAGACGGTGAACATGGCCAAACCCCAGGCACTGCTGGACCCACAGCTCACCGAGGCGCTGCTCAACCACTACAGGCAGGAGAGGATGCTTCAGGCAGGGAAGGACCGAGACCAGGAGATGCTCCGGTACCTGGTGGAGAAGGTCCTCTCGAGTCTGGCATCTGAGAACCAGCTGAACCCATCCAACCGCCGAGGCAAATGGGAAGTGGCAGCAGCAGCCAGCATTGGACGTGACAGAGCTACGCCTCTGAGACGAGCTAGGCGCTCTCTAGACTCCGCCCCTGTTGCCTCCCCTGATGCCGAGGCCTCGCTACTGCGGGTGAAGCGAGTGGGTGATGAAGACCATGATGATTTTGCTGGTCAGAACAACCGGTCACCCCATGCTGGCCTGCAGAGGATGAAGCGCATCGACACAGATCTGCCTCCACCTGCGAAGCACAGCCGCAAACGCCGCTCGGTGACCTACGACCCTGAGCTCATCGCTCAGCACATCATCCAGTAcctgagaaagtgagagagagaaaaagaggaagacagaaagattgCAACAGTTCACATGCTGACAGATATATGCGAGAACTCACTGTTAACTGCTTCTGTCTGGCGAACCAATGTATCTGCTTCAGTGCTATAATAAAATGGTAAACACATTCAATTATTTGTTCCACATGCTAATGCATATGagcaaatgtaatttttatttatgggTTTGCAGTAGATGCAGTGATGCACTGCAGTTGGCAACCTGTCAGTCCTGGTAGTTCAGATATTGGTATTGACATCAGTTGAGTTCCACTTGAGTCTCAAGACCAAATTATCCTTTTCTTAAATTGAGTTTTCTTAATCTGAATCACTGACAGTGAGCGGTAAATCATGACCTTATACGTTTAAAACTTTCTATagtcaaaaatgtaaaatctttcTCCCCAAAGGAGTAGCTGTTTTCTCGACATACTGGCCATCATCAACACAGTGGACACAATATCAGAATAGCACCTTATGAATTTACCTATTTTATCCTTAAAAGAGACTGGACTTTCCAAGGTCACCAGCCCTTTTACTGGGATTAAATAATGCTACACTTCTAGCATTACAGGAActattttaaagaaaaccttTAAAGATATGACATCATGAAAATAGGTTATCCTAGGTTATCCTAAAGTGCCACAACCCCAAGCCTTTACTAATAGCAAATGAGTAAATGGGCCATTAATGGTCCATACTTACCACTTTATCTAGCCCACATAATCCTTGAGGAATGACAGTTAAATATATCCCAATTTAGCTGCCAGAACACAGCCTTAACAGCCTTGCTGAACTAGCATGTTCAATGCAAAATTGAAAATTTAAATCGTTTTTTGTATTTGTGCCATTCCCAActgtttttggattgtttttggTTACTTactattgaaaaaaatatttgcctTTGCCATCACTGGCCTTTATATTCTTAAACCCAACCATATTTGGCTTGGTTTATGGCAAAGTGAAACCCCCAAATTAGCTCTAGAAGTAAGGTAAATTCCGATCAACCCTCTAGCACACAGGTTTCGATTCCTGGTCCTAGTATACACGCCCATTATCCTGCAGATTTCAGTGATTTCCCTTGTCTCAACACATCTGATTCAATTAATCAGCTActtaacagcccttcctgagttaAAGTTGTGTCTTAGAGCTGGGAGAACAATAAAATGTATGGGCCAGGGGGTTCCCCAGGATCAGGGTTGTGAACCTGTCTCCTAGTATATACTATTTGTATGTATATGGTGGTGGTTTgatttcttttctgtctttttcataGCATGTTTCAACATATAAAGCACTAAAATGCAGAATTTTTTTGTCCCCTAAGCCCATAGCCTTCTATCAAGCTTGTATGAGGCAGCAGTggatcagtggttaaggcattgggcGACTGATTGAAAGGTTATGAGCTTAAATCTCAGCATCACTAAGCTggcactgttgggcccttgaacaAGTTGCTTAACCCTTcatctgctcagttgtatcTTGTCTCACTTGTAAGTCACATTGGATTAAAGCAACAACAAAATGAGTTTAATTTAAATCAAGCTCTTGGTCATGAAAGTGTATGGATTTGCAGCTAGCACATATATAAATGGTAGCAAATGGTATTGCTGCAGTGTTCTTGCGTCGAgacatttgtttttgtccaaGACCTTTGCAGAATATGGTGTCACAGTTAGTTTGAGAGTTTAATACAAATCTCAAGAATGTCTATCAGAAAACTGATAAGGAACATTCCAGTTGGAATCATCTATGTAACCAACAAATTAGCTTTGGAAATAGTTTCCCAGATCAAAAAAAGACAGGCTTTACTGCCACAGATACAAGTCAACCTACATTTTTTCTTATGCTAGCATGTTAGATATTGTGGGGTCTGAGTGGAGGGTCAGCCATGATGAAGcaccctggagcagagagggtcacaggccttgctcaagggcccaacagtggcagcttaaTGGTACCAGGGATTGAACTCACAACCTGTTGATCAGCATCCCAGAGCATGAACCACTGCGCCACCACTTCCCCAGCATGACGTAATACAAGGGGCAGGATATATATGTATTCGACCTTTATGGCTGTGATGACTTGGCTGTCTTTCAAGAGCAACTGGTCTGCTGTACACTTTAATGTTTTCCCATGGGTTAACAAATATTATGACCTGTGATGTGAACTTTATCCAATTTGCCCCATCTGCACCAAAGATAACATCACCCAGTGGATTATCAGCCTTAGATATTGAGAGCTAGATTAAATGGAAGACTGAGTGTAGGtttcttttaaacatattgTTGGACCAAAAATCCAAACAGGACTAAGAGCCACCAATTACTACAATGCTAACTGGTGTTATCCATTTATCATTGAGATAGTTGATATTTTAAGAGGAACTGTTCATAAAGCAAACACTAGGACAGACACCGTCTTCACTGAAAACTCTTTATTGAGCAAACTATGAGATATTTGaatatagtagtagtagtagaagatCGTGATTCAGTAATGACCACAAAACACCAGAGTTCACATATGAAAACGTCTTGGCTCCTGCTTTTTACGCAGCTTTATACAGCCAGACTGAGCCTAAGCACAAGGGTTGCTGAGAATATTgtctattacattattatttaaatatatcaaaTTTCACTCAACTCAATTTATCAGTCAATGAGCCATGAAATAGCAGACCTATTGTGGTACGACCTCAGACGTTGGCATTGAAGCACACAGCAAAATTCCCAGCACTGTGTTAATTCTTTAGGTCCGGCTGGACATATAATAAAATTAGGCGTTAACTGAGCACTGTGTTGTTCTGCTCTCTTTCTGATCTCGTGTTTGGACAGCGTTTGACCTGCATGTATTACTGAAACCTACTCTGACCATCCTCGCTGTGGACGAGTCAGTCACTGTTGTTCTGCTTCCTCTTGCTTCGCCACTGGCTTTAGTACATTAACGTGCCAACAAAACGATGACGCTGGCTGTGTTTTACACATAACCTCCCCTTTGGAGCTCCCTCTCTGATTACTCTATATGAGAATATGTGCAAGAAACTGTGTTTTAAATCTTAATTATATGCTTTTTGTTTCCCTATCTGTGTGGTTATGAAAACTTAATCTTATAACTCTTATGCATCTGTGACTAGCAGGTGGGattgtaaaatgaaatgagaaaaaaacgaGTTATAATAAAAATTGGATGTCGATGTCAAAATCAGTTCTTTGTTCTTCTGTACTCATCATTCACTTTAGAGCTCAATATTTGCTCATGCACTGTGTTGCTAATGCAATGTGTAATAAACGTTGATTGCAATGTTTCATGAAAA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149580 lncRNA upstream 48914 4111574 ~ 4185080 (+) True G126549
TU149551 lncRNA upstream 101325 4069691 ~ 4132669 (+) True G126529
TU149545 lncRNA upstream 172928 4060279 ~ 4061066 (+) True G126525
TU149465 lncRNA upstream 260710 3970379 ~ 3973284 (+) True G126454
TU149510 lncRNA upstream 269898 3907079 ~ 3964096 (+) True G126493
TU149636 lncRNA downstream 6087 4253744 ~ 4254762 (+) True G126591
TU149676 lncRNA downstream 70553 4318210 ~ 4358056 (+) True G126628
XR_003403565.2 lncRNA downstream 238614 4486271 ~ 4494004 (+) True LOC113535080
TU150205 lncRNA downstream 378476 4626133 ~ 4672874 (+) False plxnb3
TU150204 lncRNA downstream 415322 4662979 ~ 4672874 (+) False plxnb3
XM_034306914.1 mRNA upstream 1509 4220650 ~ 4232485 (+) True ssuh2rs1
XM_026928207.2 mRNA upstream 56144 4153037 ~ 4177850 (+) False slc6a6a
XM_026928206.2 mRNA upstream 56144 4153038 ~ 4177850 (+) True slc6a6a
XM_026928208.2 mRNA upstream 56144 4153040 ~ 4177850 (+) False slc6a6a
XM_026928566.2 mRNA upstream 102624 4119035 ~ 4131370 (+) True abtb1
XM_026928364.2 mRNA downstream 128977 4376634 ~ 4388950 (+) False LOC113535168
XM_026928362.2 mRNA downstream 129159 4376816 ~ 4388950 (+) True LOC113535168
XM_034306373.1 mRNA downstream 130339 4377996 ~ 4388950 (+) False LOC113535168
XM_026928602.2 mRNA downstream 146691 4394348 ~ 4445422 (+) True fgd1
XM_026928603.2 mRNA downstream 169764 4417421 ~ 4444098 (+) False fgd1
XR_004578620.1 other upstream 132305 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2001854 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 2302576 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 2427204 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 2887409 1344336 ~ 1346585 (+) True G125062
XR_004578621.1 other downstream 495582 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 2509106 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 2509106 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 3176366 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 3176366 7424023 ~ 7430997 (+) True mrps36

Expression Profile