RNA id: XM_026928362.2


Basic Information

Item Value
RNA id XM_026928362.2
length 1966
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC113535168
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4376634 ~ 4388950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaaacacttcaggacctgGTCACTGTAGTGGCCTTCAAAATGGCGGCGTGTTTTCCTCAGAGAAATGTAGCAAGGGCAAGTTAATGAGGTTGCATTATGTTTGTAATGAAACAGGACCCTAATTCACTTTATTTCACCACTTCATAGATTTACTTCAATATTTACTTCAGTACATCGAACAGTAACGAAACTGGGCAGTAGAATGCCTTTTTAATTCAATCCTTTCCATACTATTTACAGCTTCTCTAATCGTCGACCGGAAGTGCCTGCAAGCTGGCCTTGTGCACGCGCTGAACTCGAGTTCATTTTGTATTTGGATAAGTTTTATATCTGTCTTATATTAGACTCGCTTTTAATTTCAGAAACGGGCGATGTTCACGATTCCGGTGCTTTACGTTGCGTTTAATCTTTTTCTCGCCACGGCTGCGGATAAAGCTTTAGCAGAGAAAGGGCGCGTGGAGCTACAGAAGCTGCGGGAGTTTGCGGGTCAGACGCGGTATGGCGCGTGCTGGTCCAGGGCGCTGGAGAAAGTCCATGCAAACTGTCGGGATTTCTCCGACGACACGCAGAGTATGATGGCTCTGGCCTTCACTCACTGTCACCTGAGAAGGTCTGGACGGAGTTTTCCGGAGTGTCCTGAGGGCAGCGATGTTAAAACGTGCACTCGCGACATGGACCCCGTCGCTTTTAATACCTACACAGAGTTCTTCACCCACGCCCACAGCATTTGCCACTACCTCCAGAGTGAGCAGTGGCAGCATCGGGCAGAAAACACCATCCACAGGCTGACGGAGAGTTCAGCCGGTGTGGCCGAGCAGCTTGCGTCCACCCAGAGGATGGCTGAGGATCTAGTGGAGGCCCAAAGTGCTGCTCTGAAATCTCAGGAAACCATCCTGCGCAACGGAGAAGAGCTGAAGACCACACTGCAGCACTCCACAAAGGGTCTGAGGGATGTGTTTGCTGAGATGAGGCATTCTGTTGAGGAGCAGCAGGTGGCGTTTGCCGAGATCTTTAACCGCGTCGCTTTCCTTCAGAGCTTCATCATGTCTGAGTCACACACCCTCAGCTCTCTGTTGTACAATGCGCTGGGGCTCTGTGCATCCTTCCTGCTCACCTCTACACGCCGCACCTCAGGAGCGAGGCTTTTTCTGTTCGGGCTGGTGGCTCTGAATGTGTACCTGGAGCGTCTGATTTGTAGGACGGTGCTGGAAGATGATAATCCCGGATATCAGCAGATGGAGCGGATCACCTTTTTGGTCGGGCTTCTCAGGAAGGCCATGGTGATGATCGCCTGCATTGTTCTGCTGTACTTTGCCTCCCGGTTCCGCAATGTGAACAGGGAAAGTCTGGAGATCCTGAAGGAGCTGAAAGAGACTCAAACTAATCTTAAGCAAACCTTGAGGAAAGCAGagcGTCTTTCAGGGTATTTAAATGACTGGACTGAGCCCAGACAGAAGCAATGGGGTGGAAAGTGGGAACAAGAAGAGGGGAGCAGTTTGGTCATTTTGCATTCTTCTGGCGCCGTAGAGGCCACCTTGCCGTCACTTTCTTCCCTTCACAGGAGCCGGCAGTGTGAGAGCTTTGTTCCACCACTGGAGGCTCCGAGCACCTCAGAGATCCCAAAGAGAAGGCAGCGTCGTTCTTCAGGCTCCCGTGTGCGTAACTCTTCGGCACTCGTCTACAGCGTGATAGTGGAGGACAGCCACAACCAGCCGAGGTACAGCCTGAGGAGCAGGAAATCCTTATGCGCCCTGGAGCCAAAAGGCGAGAGAGACTGATACTGATCTGTCCAGgagcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgaGGGAGTGTGACGAGTGACCACATCTGTGAAATATGGATTCCTTTTAGCTGTTGTGATCACGTTTCACATTTTTATGGATTTCTTGTGGATTCGTTTAATAAATacggttttattattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149676 lncRNA upstream 18760 4318210 ~ 4358056 (+) True G126628
TU149636 lncRNA upstream 122054 4253744 ~ 4254762 (+) True G126591
TU149580 lncRNA upstream 191736 4111574 ~ 4185080 (+) True G126549
TU149551 lncRNA upstream 244147 4069691 ~ 4132669 (+) True G126529
TU149545 lncRNA upstream 315750 4060279 ~ 4061066 (+) True G126525
XR_003403565.2 lncRNA downstream 97321 4486271 ~ 4494004 (+) True LOC113535080
TU150205 lncRNA downstream 237183 4626133 ~ 4672874 (+) False plxnb3
TU150204 lncRNA downstream 274029 4662979 ~ 4672874 (+) False plxnb3
TU150236 lncRNA downstream 383844 4772794 ~ 4795256 (+) True G127105
TU150279 lncRNA downstream 452476 4841426 ~ 4842134 (+) True G127147
XM_026928336.2 mRNA upstream 129159 4233994 ~ 4247657 (+) True pcsk1nl
XM_034306914.1 mRNA upstream 144331 4220650 ~ 4232485 (+) True ssuh2rs1
XM_026928207.2 mRNA upstream 198966 4153037 ~ 4177850 (+) False slc6a6a
XM_026928602.2 mRNA downstream 5398 4394348 ~ 4445422 (+) True fgd1
XM_026928603.2 mRNA downstream 28471 4417421 ~ 4444098 (+) False fgd1
XM_026928195.2 mRNA downstream 61626 4450576 ~ 4479625 (+) True tfe3a
XM_026928196.2 mRNA downstream 61628 4450578 ~ 4479625 (+) False tfe3a
XM_026928197.2 mRNA downstream 64556 4453506 ~ 4479625 (+) False tfe3a
TU149628 other upstream 98739 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 275127 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2144676 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 2445398 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 2570026 1803497 ~ 1806790 (+) True si:ch211-229n2.7
XR_004578621.1 other downstream 354289 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 2367813 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 2367813 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 3035073 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 3035073 7424023 ~ 7430997 (+) True mrps36

Expression Profile