RNA id: XM_026928378.2


Basic Information

Item Value
RNA id XM_026928378.2
length 2433
RNA type mRNA
GC content 0.42
exon number 6
gene id alkal1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2216102 ~ 2232140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagaagaggaagaaggaggtaataataataataaaaaaaagaaaaagaaaaaaaaaagcctgatggAGGGTAAAAGATGTCCGCGTCTCCTGCCACCCACCCGAAATCGATTGCGTTACATCCACAAATCTCTCCACTTTGACGTATAAAACGGGACGCATGGTGTGGAAGAGTCGAGTGTGTTCTCCAGAGTCGGACAGgaatatacacactcacacacacacacacacacacacacacacacactctcactcactcactcacacacacacacacacacactcacacacaaccaCCGGCCGCCACCAAGCAGTCCGGTGCATGGACAGCAGAGAAGTGACGCAAGGGGACAAGCAAACTCTGCTGGACCTGCTGCTGCGCGTGATCAGGGAAGGCGAGCGGGAAAAGCTCAACACGCGGGAAAAATCCGCCCACAGCAGGCCCATAGAGATCGTCCTAAGAGATGTCAGCATTAAAGACAGgtttataaaacatttcacagCAGGACCAGTCAAGTTCCCATCGGAGTGCAGGATGCATTTTCACCGAATTTACCACAACACACGGGATTGTGCCAGACCAGCATTCTATAAAAGATGTGCGAGATTGCTGATGAGGCTAGCGATGAGCCCGCTGTGTGCTCAGCCGTAACACAATGACCCTTTTGGAGACCCGATGGCAGGTGAACCAATTCCCAAATTGGCTGCTCTCTCCTGTCCTGGATTGAGGTTTCTGCTTGGAGGAagataaaatgaaacataaaaaaatgaacttCAGCTGAATTATTAGTTCTTTCGCAATGCTGCATCTGTAAGCGTGACTCATTGCCCCAGAgctaaacacacagaaacatccATATTTGAGTTTCCATGCCTCCAGGAGATGAGAAACTCAGAAAGAATGGATTAATGCTTAAGTATTAAGCATTTTGCTCGAACACCACTTGTCATTGCTGTTGTGGTTTTGTATGTAATTTTGTGATGACTGACTTTCTTCttatttgtggatttgttgttgtttgttgtcagTGTAGTGAAAAATAGGGATGGAATAaggataaaaacaaaatggcatcccaaaaaaaaaaatttagatactttacagagagaaaaaagaaagaaaatgctgtTACTAAAATCTTCTCTGAAATCTGAATAAATGTCCGAACGCAGGAGTCAgctgtcattttaatttcattctgaTTTCACAAATTCCCCCTCTCCGAGTGCAACAAATGCTGCTTTCAtatcatttagtttttttggaTTCACaccacatgtttttgtttctgttccaGTCCAGGCTCCGcctctgtcctgtcattggtttgttagCTGATTGTGTTCAACTGTACTGTGTCTCGCCCTTGATTATTTGCGAAGTCTTATCGTACATTTCTAGTGTTAAGTCCAAGCATTGTTTCGCCAGTGCCATGTGCCACGTTTCCCGGATTTTGAACCTCACCTCTTTTCCCCGTCTTATGATTAGTGGAAGCAGTTATCCAAGATTGTTGTGCTAAGGACTTGGACAGTGATTAGCGAGTTCGCCATAATAAAGCAAGCGTTGTATTTgtgcacttgcatcctgccttCTTTCACCATACAGTACACTACTACACCGTTAAGGGGTCTTCAGTTGTCTCTTGACAGTTCTGTGTAGAAAACGGAGTGTTTCTATACCAGAAACAGCTCCAGGCAGAACCCTTTTAAAAAGGCTTAGCACCTTTATTATCCACTGAACCCTTAAAAACTGTTGGAGAACCGTTTTTCTAAGAgcaaaatgttaaagaaaatgagcaataatttggagtttgtatgACGAACCTTcccagttaatacacacactcctagaaaaagggttctttaacaGTTCATTGGAAAATAtaagggttcttagcctccAAAAATTGATTGGATCTTTGCGAGCGATGCGTTCAGGTGTGCACGGTGCTCGATAGACTTCCTCTGATCTGCGTGTGTCCTTACAGGTTTGGTAACATTAGCAACCCTTTCATCACCTCTGACGATATTTTGTGATAAAATTTTGTATCCATTAAAAATTGGAATTGAAAAAATTGCTGTGTGCATTTTGGAAGTCTGAGGAGAAAAACATTAAAGCCGTTATTTTTACTGACTAAAACAGACTGCTGTCTTTTTTCATCAAATTAACAATAAACCAATGACTAAATCTGACTAAATCTAAATCCAAATTAGCTGTTAGAATTACCACTGACGTAATCTTCAAATGGGCTGAAGAGCAGAATAGTATTTTTCCGTCTGTGTTTTGACATCGGCGGTGGCAGTAATGGACGACCGAGGACAAATCCTAAGACATAAAAGCATGGAGAATGTGCTTTATTAGGAAATGAAGTGTGAAAGATTCACCTGGAGCCATTGTTCCAATTGCTTTTCCTAGAAGCTAACAGAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148075 lncRNA upstream 45087 2169561 ~ 2171015 (+) True G125276
TU148000 lncRNA upstream 222698 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA upstream 228533 1966666 ~ 1987569 (+) False LOC113535242
TU147928 lncRNA upstream 402817 1811354 ~ 1813285 (+) True G125144
TU147910 lncRNA upstream 452777 1762304 ~ 1763325 (+) True G125129
TU148123 lncRNA downstream 20895 2251442 ~ 2252516 (+) True G125312
TU148110 lncRNA downstream 30804 2261351 ~ 2265524 (+) True G125306
TU148117 lncRNA downstream 49665 2280212 ~ 2313941 (+) False G125308
XR_004578585.1 lncRNA downstream 53902 2284449 ~ 2286416 (+) True LOC117597827
TU148160 lncRNA downstream 72401 2302948 ~ 2303492 (+) True G125344
XM_034306345.1 mRNA upstream 228530 1877028 ~ 1987572 (+) True LOC113535242
XM_034306736.1 mRNA downstream 58904 2289451 ~ 2304783 (+) True tab3
XM_034306737.1 mRNA downstream 59099 2289646 ~ 2304783 (+) False tab3
XM_026928058.2 mRNA downstream 106794 2337341 ~ 2347459 (+) False prrg1
XM_026928059.2 mRNA downstream 106997 2337544 ~ 2347459 (+) True prrg1
XM_034306596.1 mRNA downstream 130407 2360954 ~ 2366245 (+) True ccdc181
TU147950 other upstream 284684 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 409312 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147818 other upstream 869517 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 1109815 1103735 ~ 1106287 (+) False lonrf1l
TU147173 other upstream 1399445 792519 ~ 816657 (+) False dennd2da
XR_004578620.1 other downstream 1864722 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 1990137 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578621.1 other downstream 2512692 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 4526216 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 4526216 6756763 ~ 6796076 (+) False phf19

Expression Profile