RNA id: XM_026928485.2


Basic Information

Item Value
RNA id XM_026928485.2
length 2703
RNA type mRNA
GC content 0.49
exon number 21
gene id cep104
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7873393 ~ 7909722 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAAACATTGTAGTTGTCAAACAGTGGTTATGGGGATGACATGGGACTAACAAGTTGTTTTGTATTTGgCACACAGGAGCAGGATGCCACGTAAGATAGGATTCACTGTGATCAGCTGGTCTGGTCATGAGGAGAATTACAGTGCCAGAGAGCTTATGGTTCATGCTCCTACCATCAATGGCTGGAGGTCTGACAGGTTCTGTCAGTTCCCACAGGAGATCACACTACAGATGGTGGAGAGATGTCGCATTAGGAAGCTGCAGCTGCTGGCTCATCAGTACCTGATCTCTTCCAAGGTGGAGTTCCACATTGGGGACAGAGAACAGGCTTCTCCCCAGCGCCTTCAGCAGTTCCGCAGACTTGGGTACGTGTCACTGTCCACTAATGAGAAGACGGGTTTCAGAGCACGAGAACTGAAGTCGGTGCATGTAGATGCCGTCGGGACGTATCTAAAGCTTACCTTTCACAAAAACCATGTCAATCAGTACAACATCTATAACCAGGTCGCGTTGGTGGCTATAAATATATTAGGTGACCCTGTGGAGTGCAGTGATAGCAGCCCAATACCAAGCAGTGATCAGCTGATTGATCAGTACATTAGCGGCACACAGCACAGCTCATCGCTGGATGGCTCCTACGCAGGATATAAGCATGAGTCTATCTCGCCACTGGATGATTTGGCATTTGACATGTATCAGGATCCTGAGGTTGCCCATATCATTCGCCTGCTGGATGATAAGAAACAAGAAATGGTCCGATTAGAGAGATACCATCTGGCTAAAAAGCTCAAACAGGCCATAGCAGATCTACAGAAGGTAGGGGAGTGTTTGGGCAGGTATGATGTGGAGAAGCACAGTGCCATAGAGAGGGAAGACTATGACACAGCCAAGCAGAAGAAAGAGCAGATGGATGCCTACAGGCTCAGAGTCTACCAGCAACTGGAGCTACATGACCTGCTCGATATGGGTCAGATCCAGAGAATGACAGAAAACGTGTCTGACTGTAGTATTCCTTCTCCAAGTATTCGTCCACTCCAACATTCCATGCCTCTCTCTGAAACACCAAAGAAGAAGAATCAGGAACAGTCTTTGGTGGAGGACAAGCAGATTACACCTAAACCAACGAGCCATGAACACACAAGTGCagcaacaccacacacaccacctcacttTCCAAAGATTGACgTCAGCTCCATGCCATATGATGAGAGGCCTCTACCAGCGTTGAGGAAGAGATCGGAGAGTCAGCCGCAACCTCAGGCTGAACAAATGCTTGCTCCATTGGACCCAAGTAGCCCACGCAGTCCTGGAGTCACTGGAGAACCAGAACCATTGTCAGAGAAAGCCCAGAGAGAAGCTGTTCTGCCCATAGAGGTCTATGGAGACAGTCTGGTGGCTGGAGCATACTCAAAGACCTGGTCCTATAGAGAAGATTCTTTACTGGCAGTGTATAAGAAGCTAGCAGAGGTTTCACCAGGAACCCCTAAAGCTGAACTGATGAACATGATGAGAGCAGCAGTGTTCCTCTGCAAGAAAGCACTTACTGATAAAGTGTCATCAGTATTCCAGGCATCACTAAAGCTGCTAAGGATGATTCTGAAGGAGTTTGTGTCCTCTCACCAGCTGGGAAGATCTGAGATTAGTTACTGTGTAGAGCACATCTGGCCAAGTCTTCTCTCGCGGACTGGCGAGTCCACAGTGAGACTCCGCACACTGGCCATTGCTTTTATTCAGGAGATGGCTGTGTATAAGGAGGTTCATGCTCTGCAGCTCATCCCCATTGAGCTGGTAAAGCCCATAAAGAGCAGCATACCTGCACGTCTTGCTCTCAGCAGGCTCGAACTGCTGGAAAAGCTTCTGGAACAGCTTGGCACCAATGACTCTGGCTTCACCCTTGACAACGTCATGCGATTTCTAGCAGGAGCACTGGAACATTGTGCAGCGTCCGTGCGTGAGCTGGCTGTACGTATCGTGCAGACGATGTACCACCTCCACGGCCGTTCCATACTGAGCTACCTGCCACCGGATGATCCCAGCACTCGCAAAAACATCCTCTACAAACATCTCTTCGACTCTTTTGCCAAGACAGACGGAAGACTTCCACAATCACAGGTGAAGAAAGGAAGAgtacagaaagagggagagaaggaggagcAGGAAATCAAGAGCCTGCAGGAACAACTGGCTGTTCTGAAGGAGATCAGTGAAAAGGGGAAGGAGAAGAACAAAACGCCAGAGAGAAAAACTGAGAAGCCACCTAAACCAgGTGTTAAAAAGGGAACACATTCCATCTGTACTGATGGAAAAGGGGGCCAGTCCATACCAAACTACCTAGACAATCTTTGTATATTTTGTGGAGAGAAAGACAAGTCTTTCACCGAAGACGGTTTGGACCTGCACTACTGGAAACACTGTCCAATGCTGTGTCGATGCCTCCAGTGCAGACAGgtagTAGAGATCGCAAGCCTAACAGAGCACCTGCTCTCAGAGTGCGAACACAAAGCAGATTTTACCCAGTGTCCTCACTGCTCTGAGGCCATCAGCAGAAATAAGCTGACTGAACATGCTCAAAGCACATCTTGCAATCcTCTTCCAGATATTCTGGCCAATGGAAACTGTAACCACTGTCCTTTGTGCCATGAGAACTTCCCTCCAGGAGAGGAGtcaagtgatcctgaccagtgatcctgaccccttctgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152143 lncRNA upstream 11882 7856004 ~ 7861511 (+) True smim1
TU152139 lncRNA upstream 11882 7857854 ~ 7861511 (+) False smim1
TU152140 lncRNA upstream 11882 7857854 ~ 7861511 (+) False smim1
TU152125 lncRNA upstream 27236 7842533 ~ 7846157 (+) True G128777
TU152171 lncRNA upstream 38735 7833516 ~ 7834658 (+) True G128811
TU152117 lncRNA downstream 22051 7927566 ~ 7929704 (+) False G128775
TU152119 lncRNA downstream 22051 7927566 ~ 7929704 (+) True G128775
XR_003402768.2 lncRNA downstream 62764 7968279 ~ 7970772 (+) False LOC113526371
TU152198 lncRNA downstream 66839 7972354 ~ 7998833 (+) True G128837
TU152220 lncRNA downstream 74129 7979644 ~ 7994612 (+) True G128851
XM_026916283.2 mRNA upstream 11823 7856511 ~ 7861570 (+) False smim1
XM_026916265.2 mRNA upstream 11823 7857703 ~ 7861570 (+) False smim1
XM_026916274.2 mRNA upstream 11823 7858075 ~ 7861570 (+) False smim1
XM_026928502.2 mRNA upstream 176824 7694733 ~ 7696569 (+) True LOC113535261
XM_026928361.2 mRNA upstream 186055 7684995 ~ 7687338 (+) True ndufaf2
XM_034306604.1 mRNA downstream 11251 7916766 ~ 7921741 (+) True c8h1orf174
XM_034306715.1 mRNA downstream 49208 7954723 ~ 7959217 (+) True si:dkey-20d21.12
XM_026916892.2 mRNA downstream 212062 8117577 ~ 8122886 (+) True LOC113528372
XM_026914400.2 mRNA downstream 393840 8299355 ~ 8301673 (+) True si:dkey-72l14.3
XM_026926795.2 mRNA downstream 489474 8394989 ~ 8402547 (+) True LOC113534163
TU151932 other upstream 442396 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 445836 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1068083 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 1077317 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 3110402 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 62720 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 401649 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2452431 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2651003 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 2964619 10870134 ~ 10874017 (+) False mrpl55

Expression Profile