RNA id: XM_026928565.2


Basic Information

Item Value
RNA id XM_026928565.2
length 2023
RNA type mRNA
GC content 0.49
exon number 12
gene id cxxc1a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4505413 ~ 4512377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACAGTGAAACTTCAGAGTTTGACCTGCATTCAGGACCAGAGATGAGCATGAACCAGGGCAACGCTCCAGTTTACTGCATCTGTCGCAAACCAGACATCAACTGCTTCATGATGTAACGATGACTCTTTAGAGACAAAATTTCGTTCCAAGAAGAGCCGGGACAGAGAGTCAGACGGAGACGAAATGGAGAGACAGCTTGAGCATGACACGCCTGATTTTAAGAATGATCGTCGACGCGGGTCACGGATTAAGCGCTCGGCACGTATGTGCGGGGAGTGTGAGCCTTGCATGCGGACGGAGGACTGCGCTCAGTGTGACTTCTGTAAGGACATGAAGAAGTTCGGCGGGCCCAACAAGATCAGGCAGAAGTGCAGGCTCAGGCAGTGTGAAGTGCGCGCccggAAAATGCTGCGGGTGAAGGAGGAGGAGTACTCCATGTCTAAAGGCCGAGAGCGGTTCCAGCCCGACTACCCCCTGTCAGACGAGTACAGTGAGAACGAGATGGAGCTCTACCAGCAGTACTGCGCTGGCAAATACGCAGACCATGGATGGAACAGTGATGAAGACGATGGTTCCTACCTTGATCCCACTATGCGAAAGAGAGCTGTGAAGGTCAAGCAtgtgaagaggagagagaaacgATCTGAGAAAAAGAAAGAGGAGAATAAGCCCCGTAAACACAAACCGAAGCAGAAGCACAGGGACAAGGTGAGGCACAGTGAGAGGACAGAAGCTCGAGACAGCGGGGAATTCAGACAGTGCCTCGGGCCAGGCTGCGTTGAATCTGCGCGTCTCGGCTCCAAGTACTGCTCTGATGATTGCGGCATGAAGCTCGCTGCCAACCGGATCTATGAGATCCTCCCTCAGCGTATCCAGCAGTGGCAGCAGAGCCCCTGCATCGCCGAGGAGCAGGGAAAGAAGCTTCTGGAACGCATCCGGCGCGAGCAGCAATTAGCCCGGACACGGCTCACGGATATGGAGAAACGTTTCCATGAGCTGGAGGGCATCATCGCTAAGGCAAAGCAGCAAGTCGTGCAACACGACGAAGAGGTAAACGAAGGAGATGATGACACAGATCTTCAAATTTTCTGCGTCTCCTGCAGTCACCCGGTCAACCCCAAGGTGGCGCTTCGTCACATGGAGAGATGTTATTCCAAGTATGAGAGTCAGACATCATTTGGCTCTATGTATCCCACACGCATAGAGGGtgCCACGAGGCTGTTCTGCGATGTGTACAATCCTCAAAGCAAAACATACTGTAAAAGGCTTCAGGTTCTCTGTCCTGAGCATTCCCGAGATCCAAAGGTTCCAGCAGATGAGGTGTGTGGATGTCCTTTGGTGCGTGACGTCTTTGAGCCCACGGGCGAGTACTGCCGAGTGTCGAAACGCAAGTGCAACAAACACTACTGCTGGGAGAAACTCCGCCGGGCCGAGGTGGACCTGGAGAGAGTGCGAGTGTGGTACAAACTGGACGAGTTGTTTGAACAGGAGCGCAACGTCCGAATAGCAATGACGAATCGCGCAGGTCTCCTGGCTCTTATGCTACATCAGACGATTCAACACGACCCACATTCAACAGACCTGCGCGCCAGCAAAGACAGATAGCCAGCCAGGACTTTCTTTTATACGGTCTGTTGGTTATTCCAAAAATtgttagaaaaagaaataacgagtgtgtttcattaaaatgtacatttaaataacatattaatacTGTTAATTGCTTTTTAAAGGAGAAGGATATTGGATGATGACACTATATTAAAGATTCATTAGATCAGTTTTGGGAGATGTTACCAGTTATCAGTGCTCTAAGCACTACATAAAGTTGCTCTGTGTGTCCATACGCATCACTTAATCAGTCATCATTACACTGTTGtaccatttttaaatattagtatacttattacaaacatttattgGTGCTTATCTTGtttggaagaagaagaaagaatcgtgtatctgtgtgtaaacATGGCCGATACGTTTCATTCCTTGAAATAAACTTTTATTGTGTGGCA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403565.2 lncRNA upstream 12126 4486271 ~ 4494004 (+) True LOC113535080
TU149676 lncRNA upstream 148074 4318210 ~ 4358056 (+) True G126628
TU149636 lncRNA upstream 251368 4253744 ~ 4254762 (+) True G126591
TU149580 lncRNA upstream 321050 4111574 ~ 4185080 (+) True G126549
TU149551 lncRNA upstream 373461 4069691 ~ 4132669 (+) True G126529
TU150205 lncRNA downstream 113756 4626133 ~ 4672874 (+) False plxnb3
TU150204 lncRNA downstream 150602 4662979 ~ 4672874 (+) False plxnb3
TU150236 lncRNA downstream 260417 4772794 ~ 4795256 (+) True G127105
TU150279 lncRNA downstream 329049 4841426 ~ 4842134 (+) True G127147
TU150287 lncRNA downstream 372643 4885020 ~ 4939386 (+) True G127155
XM_026927918.2 mRNA upstream 1291 4500785 ~ 4504839 (+) True ntpcr
XM_026928195.2 mRNA upstream 26505 4450576 ~ 4479625 (+) True tfe3a
XM_026928196.2 mRNA upstream 26505 4450578 ~ 4479625 (+) False tfe3a
XM_026928197.2 mRNA upstream 26505 4453506 ~ 4479625 (+) False tfe3a
XM_026928603.2 mRNA upstream 62032 4417421 ~ 4444098 (+) False fgd1
XM_026928215.2 mRNA downstream 178 4512555 ~ 4540256 (+) True mbd1a
XM_026928213.2 mRNA downstream 4353 4516730 ~ 4540256 (+) False mbd1a
XM_026928216.2 mRNA downstream 4353 4516730 ~ 4540256 (+) False mbd1a
XM_026928217.2 mRNA downstream 4357 4516734 ~ 4540256 (+) False mbd1a
XM_034306696.1 mRNA downstream 4778 4517155 ~ 4540256 (+) False mbd1a
TU149628 other upstream 228053 4220684 ~ 4278077 (+) False ssuh2rs1
XR_004578620.1 other upstream 404441 4095269 ~ 4101689 (+) False si:ch73-233m11.2
XR_003403572.2 other upstream 2273990 2216102 ~ 2232140 (+) False alkal1
TU147950 other upstream 2574712 1877041 ~ 1931418 (+) False LOC113535242
TU147915 other upstream 2699340 1803497 ~ 1806790 (+) True si:ch211-229n2.7
XR_004578621.1 other downstream 230862 4743239 ~ 4762991 (+) False srpk3
XR_004578572.1 other downstream 2244386 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other downstream 2244386 6756763 ~ 6796076 (+) False phf19
TU151927 other downstream 2911646 7424023 ~ 7427557 (+) False mrps36
TU151932 other downstream 2911646 7424023 ~ 7430997 (+) True mrps36

Expression Profile