RNA id: XM_034306298.1


Basic Information

Item Value
RNA id XM_034306298.1
length 2710
RNA type mRNA
GC content 0.41
exon number 6
gene id suv39h1b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11947451 ~ 11957403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGGGGTAAAATGCAGAGAACTGGGGGTCAACAAGAACAACCTGTGTGAATACGAAGTGGAATACCTTTGTAACTACCAAAGAAAAGTTATCACTGATGGGAAAACACAAGAAACCCAGtTTGGAGTTTCCTGGGATTTGTACTAGATCCCAACCCAGTCGACTGTAACGTCAATCTTCCCCGGACTTTGAGAGCTGTACTTGGTAAAATGGAAGGGCTATCCAGAGTCAATGAACTCGTGGGAGCCACGGAAGAACCTTAAGTGCACCAATCTGCTTAACCAGTTCTGGGAGGATTTGATGTGTGAGATGGTGCGGTTAAAGAAGCGCAACATCCCCAAGAAACTGGACGCTTCCATTGTCTCCCAACTTGTGCAGCGAGCAAAGCTTAGGCAAACCCTCAAACTCTGGGAGAATCACCTGAACAGCCTGGGCTCAGACAAGGGTCGCATCTACGTGGAAAACCTGGTGGACATGGAGGGTCCTCCTAAGAACTTCACCTACATTAATGATTATAAGGTGGGTGACGGTATCTCTCTTAATGAGGTGGCTGTTGGCTGCGAGTGTACAGACTGCCTGAACAGTCCTCTAGAGGGCTGCTGTGCCGGAGCCTCGCAGCACAAGTTTGCCTACAATGACTCAGGACAAGTGCGCATTCGGCCTGGACTACCCATCTACGAATGCAATAAGCGTTGTCTCTGCGGGCCCGACTGCCCCAACAGGGTGGTGCAGAGGGGCATTCAGTATTCACTGTGCATCTTTAGGACAGACAACGGCAGGGGCTGGGGGGTACGGACCATGGAGCGCATCCGGAAGAACACCTTCGTCATGGAGTACGTAGGAGAGATCATCACTACAGAAGAAGCAGAAAGGCGAGGTCATGTCTATGATAAAGAAGGAGCCACCTACCTGTTTGACCTGGATTATGTGGATGATGAATATACAGTGGATGCAGCTCACTATGGCAACATTTCTCACTTCGTCAATcacagttgtGATCCGAATCTTCAGGTATATAATGTCTTTATAGAAAACTTGGACGAGAGACTGCCACGGATAGCTTTCTTTGCCACTCGTGCCATTAAACCAGGGGAGGAGCTCACCTTTGACTACAAAATGCAGAttgATCCAGTAGATGCAGAAAGCACAAAGATGGACTCTAATTTCAGTTTGACGGGACTCCCAGGTTCTCCCAAGAAACGCATGCGTATAGAATGTAAATGTGGTGTGCCATCATGTCGAAAGTATCTATTTTAAACAGTCCAGGGACTGGAGGAGTGTGTCATGCCAAACTGTCACTAAACATAATAGTGGCTGTAATAGCAGAATCTCGTTACATTGCAACAAAATTGTACAAATCATTGTTCATGTTTACTATCaaagtgtgatatttttaattaatgaatttaatatGTCTGGTTTGATCAGagatgtgtgttttcagtcctcTGTTTCACACCTCTGATGCTACTCCTCAGCTAATAATTCCCAACACCTTCATGGTCTGAAGAGGATAAACACACATCTGTAGGACTGGAGTGTGACACCCCTGGTTTATACTTTAATGGTCTTccaaaaatcatttatttgatatatttcacattttatcaGTTTTCTTCCCCGACATTTGGCATGATGCCATGAGGTcccatttcactacattacatatgtgaaaatgtacagttctgtgtaaatgcatttttttcatcaaaagtCAAAGATATCTATCATCGTGAGTTTGGCAGGAGATTgtgtttatccttttttttttttaactgaaatttttatagtttagttatttttatgagaaggcattttatttttttttaataaaacagtgaTGTGTCAGGCAAGTGCATTAGTATGAAAATATAAGTACAATTTTATATGAATGCTGGTTAAACCCACTGAGGATTATGTTAAATCTTTTCTAGTTTGGTGTAATCTGTGTCTGGAAAACTGTACTTGTGTGCAGCTTTGATTTCATGAACCTGCCAACTGGGGGCAAAACTGTATTGCTAATGCCAGAGcaatacaaaaaagaaagatgtgCTTTTTGCGAATCTtacataggaaaaaaaaaaaaaaaaattccacaccCATGAgttctgcatttatttaatcttcACTTGAATTTTATGGCAGTGTGCAGATTGTGCAGATAACTGCTTAGTGACATTCTGACTGTACTGTTTAAATGAACCTTTGGTATTTTCTAAATATctcagtgttgattattttctatgtTGTAGCAATAACCTGTGATATACAGACGGGTGAcgtatgaaaggaaaaaaaaaagttgttgggCCACCAGGAGCTGCCATAACAGCTTCAGTGCAACTTAATAgggcatagattctacaagtatCTAAAACTACACTGAAGGGGTGAACACCTTtcttataaaacattttcactctgttggtgttttgatgtCACGTCAGAtgagatctggtgagtgtgaaggccagGGCATATGTTTCACATCGTTTTTGATACTCATCATACCCAAAACTCAAACTATGTTAGCACAATACCCTCTGTTTTTTTTGGTCACCCGTCTGTATCTGACTTTTATCACTCTGTACTGTTGAGACAAATGTACTGTTGTGACAAAACTACAGATAGCTATAGATGTTTAAAAAAGGCTACCAGCTGACATAAGCTGgtgcacatactgtatttgtattaaaaacatCAACTTGA

Function

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0051567 histone H3-K9 methylation biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154767 lncRNA upstream 233842 11716832 ~ 11717885 (+) True G131061
TU154744 lncRNA upstream 262053 11677903 ~ 11689674 (+) False uck2a
TU154619 lncRNA upstream 399696 11548962 ~ 11552031 (+) True G130960
XR_004578615.1 lncRNA upstream 592347 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 1003381 10944657 ~ 10948346 (+) True LOC113527270
TU154974 lncRNA downstream 24362 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 35416 11992819 ~ 11993039 (+) False foxp3a
TU154976 lncRNA downstream 37011 11994414 ~ 11994800 (+) False foxp3a
TU155067 lncRNA downstream 259601 12217004 ~ 12217214 (+) True G131279
TU155070 lncRNA downstream 268749 12226152 ~ 12226362 (+) True G131282
XM_026914171.2 mRNA upstream 41723 11906748 ~ 11910004 (+) True taf10
XM_026914180.2 mRNA upstream 41723 11906749 ~ 11910004 (+) False taf10
XM_026915550.2 mRNA upstream 47470 11882246 ~ 11904257 (+) True efhd2
XM_026920455.2 mRNA upstream 75639 11861457 ~ 11876088 (+) True LOC113530451
XM_034306543.1 mRNA upstream 89847 11858468 ~ 11861880 (+) True fhad1
XM_026919562.2 mRNA downstream 21783 11979186 ~ 11995218 (+) False foxp3a
XM_026919580.2 mRNA downstream 24389 11981792 ~ 11995852 (+) True foxp3a
XM_026919590.2 mRNA downstream 24389 11981792 ~ 11995852 (+) False foxp3a
XM_034306721.1 mRNA downstream 24389 11981792 ~ 11995218 (+) False foxp3a
XM_034306722.1 mRNA downstream 24406 11981809 ~ 11995218 (+) False foxp3a
TU154763 other upstream 241182 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 242295 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 242295 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 243766 11705655 ~ 11707961 (+) False porcn
XR_003403367.2 other upstream 317883 11622310 ~ 11633844 (+) False LOC113530800
trnad-guc_1 other downstream 424596 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 1104533 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 1106647 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1412145 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1747853 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile