RNA id: XM_026945688.2



Basic Information


Item Value
RNA id XM_026945688.2
length 810
RNA type mRNA
GC content 0.45
exon number 7
gene id myl7
representative True

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26368415 ~ 26371797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GACTGAGAGAGGCAATGAGTTCTTTTTATAAAGAGCCCAGTGATAAGGTGAGCTATACATAAAGCCCCTATCAGCTCCCACTGACCcggacacacacgcacacacacagagctacaaGGAGCCAGCAGACATGGCGAGTAAAAAAACAGCAGCGAAGAGAAAGAACACCCAGCGGGCCTCCTCTAACGTTTTCTCCATGTTTGAGCAATCACAGATTCAAGAGTTCAAGGagGCTTTTGGCTGCATTGATCAGGACCGAGATGGTGTGATTAAGAAAACAGACCTGAAGGAAACTTATGCACAATTAGgaAAACTGAATGTAAGCGATGAAGAACTGGATGCCATGTTGGCTGAGGGTAAAGGCCCCATCAACTTcactgtcttcctctctctctttggaGAAAAACTCAATGGTACCGACCCAGAGGACACCATTCTCAACGCATTCAAACTGTTCGACCCCGAGGGCACCGGCTTTGTCAATAAGGAAGAGTTCAGAAGGCTTCTGATGAACCAGGCAGACAAGTTCACAGCAGAAGAGGTGGAGCAGGCTTTTTCCTTGGCCCCGATCGACGTGTCCGGGAATATCGACTACAAATCTCTTTGTTACATTATCACACACGGAGATGAGAAAGAAGAATCATAAAGAAAATACTAATTAAATATGTGAACAGGTTGAACTGGCTACTGGATACAAAGTGTTGGTAAAGTGAATTTAGATTGGattgtgagtctgtgtgtgtgtgtttgtgggggaGAGGCGTGTATTTCAATAATGATAATCatcattaaaggaatactccaacTTTC

Function


GO:

id name namespace
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055005 ventricular cardiac myofibril assembly biological_process
GO:0045823 positive regulation of heart contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12754 MYL7; myosin regulatory light chain 7

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU164434 lncRNA upstream 332282 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 417966 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 553374 25810175 ~ 25815041 (+) True G139172
TU164343 lncRNA upstream 685324 25672518 ~ 25683091 (+) True G139166
TU164300 lncRNA upstream 809750 25557340 ~ 25558665 (+) False egr3
TU164785 lncRNA downstream 28394 26400191 ~ 26423694 (+) True car15
TU164826 lncRNA downstream 141095 26512892 ~ 26519482 (+) True G139551
TU164945 lncRNA downstream 506839 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 519280 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 735132 27106929 ~ 27108878 (+) True G139686
XM_026945830.2 mRNA upstream 26818 26324416 ~ 26341597 (+) True npc1l1
XM_034307033.1 mRNA upstream 260512 26096658 ~ 26107903 (+) True fahd2a
XM_026945707.2 mRNA upstream 260512 26096658 ~ 26107903 (+) False fahd2a
XM_034307034.1 mRNA upstream 260512 26096883 ~ 26107903 (+) False fahd2a
XM_026945706.2 mRNA upstream 260512 26096883 ~ 26107903 (+) False fahd2a
XM_026945866.2 mRNA downstream 2013 26373810 ~ 26397861 (+) True tbc1d10aa
XM_026945906.2 mRNA downstream 28394 26400191 ~ 26462321 (+) False car15
XM_034306940.1 mRNA downstream 28394 26400191 ~ 26462321 (+) False car15
XM_026945904.2 mRNA downstream 63719 26435516 ~ 26437704 (+) True aplnra
XM_026945908.2 mRNA downstream 82675 26454472 ~ 26462321 (+) False car15
TU164394 other upstream 451617 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other upstream 451617 25916090 ~ 25916798 (+) False LOC117597866
trnae-cuc_21 other upstream 1096735 25271609 ~ 25271680 (+) True trnae-cuc_21
TU163200 other upstream 2354689 24011617 ~ 24013726 (+) False fkbp1aa
XR_004578635.1 other downstream 82675 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 82825 26454622 ~ 26457276 (+) False car15
trnaa-agc other downstream 104481 26476278 ~ 26476350 (+) True trnaa-agc
trnaa-agc_1 other downstream 105008 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc_2 other downstream 105590 26477387 ~ 26477459 (+) True trnaa-agc_2

Expression Profile