RNA id: XM_026945691.2


Basic Information

Item Value
RNA id XM_026945691.2
length 2868
RNA type mRNA
GC content 0.39
exon number 12
gene id glt1d1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28468419 ~ 28495033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACCAAAAGTAAATATCCGTGTAAAAATACAGTACCGGTGACCCTCTTGTACAGGACAGGATTAAACAGAGCAGCCTTTGTTTCAGATATTTTAAgtgtaaaattttaatttattccagACTTATTTCGCGAGACAGTGGAGAAATGAGATTACTGTTCCTAGCTTGCCTCAGTCCCAAAACTGGGAATTGTACTACTGCCGAAAGGATAAGaGATCATATAGAGAGCGCAGGTCATGTCTGTGTGCTTCGGGACACCAGAGACTTCAGCTCGGCTTCTGAGGTAACGCTGCTCATGAGTCAAGATCAAGAACCGTTTGACGCAGCGCTGGCGATTCATCTATTTAAAGGAGGAAGACTCCTCTTAGATGTTGGAGTGCCTTTCGGAGTGGTCTTCGGAGGGACGGACATCAACGAGGACATCAAGGACGAACACAAGCGAAGCGTCATGGAGGAAGTTCTGCACAGAGCCAGGTTTGCTGTAGCGTTCACAGAGGAGATGAAGCAGAAAGCTCAGGCTTACTTGGACTGTGACATCACTAAGATCTATGTGCAAGCTCAAGGAATTGAGACGAGAGTGAGCTCTGACTTCAGCTGGAGGGATTTCTTACGCACTTCAGgagtgtgtgtggatcgAGTAGATGACCTGCACGTGTTCCTGTTAGTGTGTGGACTCAGAAAAGTGAAGGACCCTCTCTACCTGCTGAACGCTTTCTCAGAATGGCATACCCAGAACCCTCTGGTGATCCTCATCATCATTGGCCCAAAGATCGACCCTGTACTTAGCTCAGAGGTTGAAGAGTGTGTGAAGAGGTCTGCTGGAGTATTTTTAGCAGCAGAGAGGAGTCAGGAGGAACTCCACGCCGCCATGAGGAAATCATTCGCCGTGGTCAACTCGTCCGTTTCTGAAGGCATGTCCGCCGCCATCTTAGAGgCCATGGATTTGAATGCGCCAGTGTTAGCGAGGGATATTCCCGGGAACGCTGCGATTGTCCAACACGAGCACAGCGGCCTGCTCTACTCGTCCCCCGAGGAGTTTGTGCTTCTGTCCAAGAGACTGCTGAGTGATGAGGAACTGCAGGAGAACCTGAGAACCAACGGTAAACGCTACGTTATGGAGAGACACGACTCTATGAAAGAGAGAACGACGTACCAACAGCTGGTGGAAAAACTGCAGTAAGGCTCAGAGCAGCTTCACTGTTTTCCAGTTTGCTCAAATGTTCTTCTTGTGAACCTTCTCAACACCTGATGGCTTTTATACGGATGAGATCATTTTCAACTTGAACCCATGGGAACAAACATTGCATACATTTAGGTTTACAGTTACAGGAGCGATGTTTTAATCTATTAGTAATAATCACTGCTGCAACAAAAACGTTTCATTTTTAGGAAAAATTATGATAAGGAAATTCAAATTGAATGGGTTTTTATAAATGCTTGGTTTCCTTGCAGTAGGAAAAGATTTTCAATTTATGTTTACGTAACAGGAAAGTCATCTTCGCTAATAGTTTTGCTATTTCAGGTGCTTTGTCTTATAGGAACATTTTTGACATTCCAGAGCTCTAAAACGAGCTTAACGAGTGTCTGTACGATGGAGGAAAACTTTTTAAAGTGAACACCAGGGTCCATTTTATCCTGAGCAGCTAAAAAATACAAAGATGATCAATTACATCATTGAGCTAATGCAAACAAGACATAATTATGCACGACTTAGTgctaatattacattttcagagATTTAGTGGTTAAAATCTCTTATATAACAtatcatttacatattaattaccGAATTAGTATATCAAGATCGGCTAACTTAGCGCTTTATAATATTATCACatgtattaattataataattgttgcatttaaatatatattttattctatattttttctgtcatttaatACCAAACTCAAATTTGAAATTAGATATTAGAAACTAATAAGAGGTCTGTAGACAGTACATATTCTCTTCTGTGCTTTGGGGGAACCCTTAactgtagaaccctacaacaaaggcATTTTCTTCCATCTGAAACCCTTTTATGAACATCTAAAACCCTTAATTGTCCAATGCCACTTTAAAggacccttgaagaaccctttttttaagagtgtatgtATTTACTGGGTAAATGTGCAgcacaaactccaaattattgctcattattttcttcttaataacaAGAACCTGTCAGGATAGTTCTCCTTTTagaaaaatggttctttaagtgttcactggataattaatgGTTCTTAGCTTCAAAAAAGGAAACCTTTCTGGTAGGTAAAGACTTTTATAGGGTTCTACCCAGAGGGACAGCCGAAGAACCAGGTCTTAGTGTCTTAGTAcctgttatttatttctaattatgCAGTTTGAGGTTGGTattaaatgacaataaataatgaataaaatatatctttaaatgtaataattaatgtgattaatgtaaaaagtgtttaatataAAAGATAGGTGATTATGGTGATAAGATAATTAGGTACTAAATAGGAATGAAGGAGTGTCTGAAAACTTCTGATTTCCATGACAACCGGTTTACAGGGCTggtgttttactgttttaaatgaTGTACTGTTTACAGaattataaatctatataaacCGTATAGAAGGCTTTATAGGAATTCTGAACTACATAAGTACTGTAGTCGAAGCTTAGTAATCCTCAGACTGTGGGTTTGAGTTTGTTTTTAGGAATAATCTTTACATACAGCaggttttgaaatgtttcacagttgataatgtaaatgctgtaaatgctcaaagaaatgtttttaaaaatatatttattcattattcttcTGAATGCAATCACTTCATGTATGTCTTCTGAATGTACCgcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166087 lncRNA upstream 33984 28419120 ~ 28434435 (+) True G140574
TU165781 lncRNA upstream 296626 28171588 ~ 28171793 (+) True G140328
TU165771 lncRNA upstream 312508 28155708 ~ 28155911 (+) True G140318
TU165764 lncRNA upstream 331587 28136611 ~ 28136832 (+) True G140311
TU165760 lncRNA upstream 343608 28124606 ~ 28124811 (+) True G140307
TU166269 lncRNA downstream 20537 28515570 ~ 28516680 (+) True G140748
TU166279 lncRNA downstream 82512 28577545 ~ 28744414 (+) True G140754
TU166283 lncRNA downstream 82512 28577545 ~ 28594444 (+) False G140754
TU166285 lncRNA downstream 82512 28577545 ~ 28742897 (+) False G140754
TU166294 lncRNA downstream 87861 28582894 ~ 28748455 (+) False G140759
XM_034306290.1 mRNA upstream 55260 28196856 ~ 28413159 (+) True si:dkeyp-14d3.1
XM_034306292.1 mRNA upstream 55260 28303355 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034306294.1 mRNA upstream 55260 28325481 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034306291.1 mRNA upstream 55260 28325620 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034306295.1 mRNA upstream 55260 28334047 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_026945841.2 mRNA downstream 293375 28788408 ~ 28803174 (+) True slc7a4
XM_034307003.1 mRNA downstream 658513 29153546 ~ 29164988 (+) True sf3a1
XM_026945780.2 mRNA downstream 672447 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA downstream 672585 29167618 ~ 29178413 (+) False pold2
XM_034307008.1 mRNA downstream 811978 29307011 ~ 29313313 (+) True bag4
XR_004578633.1 other upstream 440969 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1038942 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1738588 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1901656 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1990960 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 992940 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 993516 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 994309 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 994487 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 995082 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile