RNA id: XM_026945703.2


Basic Information

Item Value
RNA id XM_026945703.2
length 2045
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113546011
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26082899 ~ 26087466 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCTTAAGAAACAAAAGTAAAAGCAGCTCGCTTTGTTTTCACGGTTTGTTCCGCCTCTGTGAGTGCAGTAAAATGGCAGAAGCTGTTCTAAAAGCGCAGGACTCGTTCTGCTGTCCAGTCTGCCTGGATCTCCTAATGGACCCAGTGACGATTCCATGTGGACACAGTTATTGTCTGAGCTGTATTAATGGCTGCTGGGATCAGAAAGGAAATTATGTTTGTCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTCAAGAAGAACACCATGCTGGCTGAACTGGTTGAGGCACTGAGGAAGACGAGACTTCAGGCTGCTACTGTTGTTGTCTCTTACGCTCAACCTGGAGACGTAGAGTGTGACGTCTGCTCTGAGAAAAAGCACAAAGCCGTCAAGTCCTGTATGGTGTGCCTGGCCTCGTATTGTGAAGCTCACATTCAGACTCACTACAATTCTCCTGCGTTAAAGAAGCATAAGCTGGTCGAGGTCTCCATGAATCTTCAGCAGAAGATCTGCTCTCAGCATGGCAAGCTCTTGGAGATTTTCTGTCGCACTGATCAGAAGTTCATTTGTTGCTTGTGTGTAATGGATGAACATAGTGGTCATCAGACAGTCTTACCTATAGCAGAAAGAGCTGAGAAACAGcAACTGGTGGAGACCCAGAGAGAATCCCAGCAGAGAatccaagagagagagaagaaagtaCAAGAGCTGAAACAGGATCTGGAGTCGGTCAGGCTCTCTGCACAGACAGCTGTTAAAGAAAGTGAGAGGCTCTTCACTGATCTGATTCAGTCCATTGAGAAAAGAAACGTGGAGGTGAAGGAACTGATCTGGGCTCAGGAGAAAGCTGAACTGACTCTGGTGGAGGAACTTATAGAGAACCTGGAGCAGGAGCTTGCTGATCTGAGGAAGAGAGATGCTGAGCTGGAGgagctttcacacacagatGACCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCAGTGTCCCTCCTGGACTTGCAGAATTACCCAAGTTTATGATCAGACCTAAATTTTCCATAGAGGAACTGAGGAAAGCTGTAACTGGACTGACAGAGCAAGTGGAAAAGTTCTATAAACTGCAGTTAGTCAAATCTGGAGACTATAGTGCCTTGTTGCCTGAGCCAAAGACCAGAGAAGACTTTATGAAATATTTCTGTCAGCTGACTCTGGATCCAAACACAGCACACCGTCGGCTCTCTCTATCTGAGGAGAACAGAAAAGTAATGGTGACTCGTCAGGCTCAGAACCCTCCTGATCATCCCGACAGATTTGACATGACACAGCAAGTTCTGTGTAAAGAGACCTTGCTGGGGCGTTGTTACTGGGAGGTCGAGCAGATTAGCAAGTACAATTCTTCAATTGCAGTCTCTTATAAAGGCATCAGCAGGAAAGGCACAAGCAATGAGTCTAGCTTTGAGCAAAATGACAAGTCCTGGAGTTTCACTTGTTTTAAGTCgaattatttctttaaacacaataacaattgCACTGAGGTCCCTGTAGAGTCATGCTCCACCAGAATAGGAGTGTATCTGGATCACTGGGCAGgaactctgtccttctacagcgtCTCTGACACCATGACTCTTctccacagagtccacaccacattcactcagcccCTCTATGCTGGCTTTCAGATTTATGGTTATGATAACTGTTTTCAAATATGTGGTCCTAATCTGTAAAAGCCTGACATTTCCATTATGTAGTTGCCTAAATTGCTCCGGAtgagggcgtctgccaaatgccataaatgtcgGATAAATTGTGTATCACAAAATGATGTATAATTCaatgtgtattttaaattatattaaacatcTTATCCACTGTGTACATCATGGTGTGCATATATATAAGGAATTatactgttcattttattttgtagtcAAGTCTGCACTTTACTAAAACAGTTCCTCATATCAGAATGCCTAACTACCCCGTAATGCCTAACTACTTTAATTCCGAAGTTCAATCAAGCTTTGaaatttctacattaaaaaccGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164434 lncRNA upstream 46784 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 132468 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 267876 25810175 ~ 25815041 (+) True G139172
TU164343 lncRNA upstream 399826 25672518 ~ 25683091 (+) True G139166
TU164300 lncRNA upstream 524252 25557340 ~ 25558665 (+) False egr3
TU164785 lncRNA downstream 312725 26400191 ~ 26423694 (+) True car15
TU164826 lncRNA downstream 425426 26512892 ~ 26519482 (+) True G139551
TU164945 lncRNA downstream 791170 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 803611 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 1019463 27106929 ~ 27108878 (+) True G139686
XM_026945872.2 mRNA upstream 93755 25952967 ~ 25989162 (+) True antxr1a
XM_026945897.2 mRNA upstream 142286 25938646 ~ 25940631 (+) True LOC117595683
XM_034306338.1 mRNA upstream 163654 25917747 ~ 25919263 (+) False LOC113537824
XM_034307033.1 mRNA downstream 9192 26096658 ~ 26107903 (+) True fahd2a
XM_026945707.2 mRNA downstream 9192 26096658 ~ 26107903 (+) False fahd2a
XM_034307034.1 mRNA downstream 9417 26096883 ~ 26107903 (+) False fahd2a
XM_026945706.2 mRNA downstream 9417 26096883 ~ 26107903 (+) False fahd2a
XM_026945830.2 mRNA downstream 236950 26324416 ~ 26341597 (+) True npc1l1
TU164394 other upstream 166119 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other upstream 166119 25916090 ~ 25916798 (+) False LOC117597866
trnae-cuc_21 other upstream 811237 25271609 ~ 25271680 (+) True trnae-cuc_21
TU163200 other upstream 2069191 24011617 ~ 24013726 (+) False fkbp1aa
XR_004578635.1 other downstream 367006 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 367156 26454622 ~ 26457276 (+) False car15
trnaa-agc other downstream 388812 26476278 ~ 26476350 (+) True trnaa-agc
trnaa-agc_1 other downstream 389339 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc_2 other downstream 389921 26477387 ~ 26477459 (+) True trnaa-agc_2

Expression Profile