RNA id: XM_026945720.2


Basic Information

Item Value
RNA id XM_026945720.2
length 2220
RNA type mRNA
GC content 0.49
exon number 7
gene id tti2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27363523 ~ 27370047 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGGCGGGATTTGTAGCGTAAGCCTTGGAGAATGATGTCACTATCCTGCGACTACTGTCGAGAGCAAAATAAAGGCTAGTTTAACCATGTCTATTAGCTGAAATAGATAAATATACTACAGAAATGTCTTTAGAGTGCCTTCTCCGTGATTTGAGTATTAAGTCTGAAACTGAGGATGtcatttctgttctttctgaAATCCGTGAACGCTTCGAGGAGAGAAATTCAGACAAGACGAGGATCCTGAGTCGCACAGCCGAGGTGTTCAGGGTCAGTTCCCGGTCCTGGCTCTTCCCCGAGCTCAGCTCACACAGCTTCCGGAGCACTTATACAGACCTGGTGAAGTCCTGCACTGAATACGCCGCTTTGCCTTTGTGTGACACGGACAGCGGGACTTTACCGGCCACTAGCTATGAAGAGATCCCGGGAAAAGCCGTGGCGGTCGGGGGAGCTCTGCTGGCGCTGAGCGCTCAGCTCGGAGAGGCGGTGAAGTGTGGAGACTCAGGGGCGAAggctctcattcacacactcagtcctgtgctgtgtgtcttctccatcacacacgtGCAGAAGCAGGCGTGGACTGATGGATCGTCCAGGAGATGTGCTGTGGAGCTGCTGAGGAGCACAGTCACAGCCAGTGGGAGCAGCTCAGTGCAGGAGCTGCTGTGTGGAAGTGATGGAGGAGCAGCACCCTCAGGGATCCTGGGATCCATCCTGGACACACTGCAGCCTGACATGACCAAGGAAACCTGGAAGCGAAACGAAGCAGTGAAACACGTCTTCTCTTGGCTGCTGGTGCAGGTCGGGCGTCCCTGCTTAGCCGAATACCTGGACAAGGTTTTCCCTACGTCTCTGCTCATATCAGACGACTACCGGACGGAGAACAAAGTCCTCGGAGTGCACTGCCTTCATCACATCGTCCTTCATGTGCCTGCTGCTGATTTGAGGCAGTTTAACCGAGCTCAGGTGCTCTACGACGCCCTCTACAATCACCTGTACACGTCTGAAGCTCCGCTCATACAGGTGGTTCTGCCGTGTCTTATAGTTTTACTCTCAGTCCTTGAGAAGCCTCTCGGCCACGCAGGATTACCCCGAACTCCGAACCGCTGTGACAGCGTTCTCCGCCTCATTTTAACGCACATGGAAATGGAGCACAAGCTCGCGCTGCGCCGGATCTACGCCAGCAACCTCCTGCTGTTCGTCGAAACGATGGGTATAAGCATCGCTCGGCATCTGAAGAGGCTGGAGAGGGTGATTGTGGGATATCTGGAGGTCTCTGATGCTCCTGAAGAGAAAGCCAGGCTCAGCATACTCGAGGTTCTAGAGAGGACGATACAGGTTGCCTGGCCGAGgatggaGTGCAGGCTGTCTGTCCTGGCTAGGAGCTTGCTCAGGTTCCTCGTGGACGTCTCTGCAGAGTCTCTGGCTCCTGAGCTCACTGAGGAGCTGTCGAACAGAGCGACACGCTGCCTGCTGCTGCTCGATCACTGCTCACACGGCAGACTGAGGGTGGAGCTGAAGGAGGTGgacagcagctgtgtgtgtgagcgagtgttAAAGTGCATACAGGATCTTACGCAGGCAGAGTGTGTGAGCTGAGTGTCCCTGATGCACGATTCCTCACACTGTAAATGCCAAACGATGGATCTGAAGCCAGTGAGATCTAATCAGGGccatctttttcatttattttgttagtATTAAgaataagattattaaatgcATCAGGTATGTTTTTATGGACAGCTGAATAAATTAAATGGACTTCTAAGGTgacccttttttttctgattagagCTCCTGCTCAGATTCTTGGAAAGTCTGGAAAAGTTGCAGATGTTTCTGTAATATGGATTCGGGCCACAAACGTTCTCAATCAATTGTAGACTTTTATTCTCTAAACTAATACGCATCATGTTCACGGTTTCCCTTCTGTACGCtgactaagctttaaaatgttttttgtatgaATGTAGTCAAATCAAGTCTCAGTTCcagaaaaacatttcttttacaaATCTGATtagatcctgtaacaaatggtagagattttaatgttttctctgatatcctatccaacattatttttatttatttatttatttttgttggttTCAgcccgatactgatactgatactgggtattggatcagtgccatctctattAAAATGTCTATGAAACTCATTAAAgggatgaaataaaacattcagcTGCA

Function

GO: NA

KEGG:

id description
K23115 TTI2; TELO2-interacting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165078 lncRNA upstream 22017 27338993 ~ 27341506 (+) True G139756
TU165069 lncRNA upstream 68206 27288476 ~ 27295317 (+) False adam9
TU165045 lncRNA upstream 101782 27183021 ~ 27261741 (+) False fam160b2
TU164991 lncRNA upstream 254645 27106929 ~ 27108878 (+) True G139686
TU165108 lncRNA downstream 58589 27428636 ~ 27489246 (+) False nr6a1a
TU165111 lncRNA downstream 69714 27439761 ~ 27490461 (+) False nr6a1a
TU165106 lncRNA downstream 84414 27454461 ~ 27489246 (+) False nr6a1a
TU165107 lncRNA downstream 97669 27467716 ~ 27489246 (+) False nr6a1a
TU165143 lncRNA downstream 190343 27560390 ~ 27569085 (+) True G139807
XM_034306399.1 mRNA upstream 2661 27347381 ~ 27360862 (+) False LOC113546107
XM_034306398.1 mRNA upstream 2661 27347388 ~ 27360862 (+) True LOC113546107
XM_026945831.2 mRNA upstream 2661 27347389 ~ 27360862 (+) False LOC113546107
XM_034306699.1 mRNA upstream 25355 27333371 ~ 27338168 (+) True ppiaa
XM_034306452.1 mRNA upstream 31975 27297892 ~ 27331548 (+) False ogdha
XM_034306583.1 mRNA downstream 35403 27405450 ~ 27487809 (+) False nr6a1a
XM_034306585.1 mRNA downstream 95227 27465274 ~ 27487809 (+) True nr6a1a
XM_034306584.1 mRNA downstream 95231 27465278 ~ 27487809 (+) False nr6a1a
XM_026945915.2 mRNA downstream 140656 27510703 ~ 27530908 (+) True nr5a1a
XM_034306400.1 mRNA downstream 211761 27581808 ~ 27588404 (+) True fgf17
XR_003404685.2 other upstream 633692 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 796760 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 886064 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 886646 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 887173 26476278 ~ 26476350 (+) True trnaa-agc
TU165116 other downstream 58680 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 649424 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2117926 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2118502 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2119295 29489342 ~ 29489414 (+) True trnar-ucg_3

Expression Profile