RNA id: XM_026945780.2


Basic Information

Item Value
RNA id XM_026945780.2
length 1969
RNA type mRNA
GC content 0.52
exon number 11
gene id pold2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29167480 ~ 29178413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCACTTTTATGGCGGGGTCTTTTATTTTACCGGATGTTGCGTCATAACCGGAAGTGGACCCTGGTGAAGTCTTTCGCGCGAGATCCCAAAGCAGTGTCTGGTGTTTCCGGTCTtcagTCAGAGTCATGTTCTCAGACGTCACGGTGCCGAAGGAGACGCTGCTCCGTCCTCCGAGCCACGACGAGCCGGTGTTCGAGCGAGAAGAGCCGTCCTACTCCGGCTGCTCGGAGTGTTTCCGTCTCGGAGAGCGCAGCTTCAGCCGTCAGTACGCTCACATCTACGCCACGCGCCTCATGCAGATGCGGGAGATCCTGAGCGACAGAGCGCAGCAGAAATGGGgttcaGATTTGCCGATCAGGAAGCTGTGTGACCTGCAGACGGGCGAGAGGTGTGTGATCGTGGGCACGTTATTCAAACACATGGAGCTGCAGCCGTCCATCCTGAAGGAGATCAGCGAGGAGCACAACCTGCTCCCGCAGCCTCCTCGTGCCAAAtacatcagccaatcagacgaGCTCATTCTGGAGGACGAGCTGCAGAGGATCAAACTGGAGGGCAAAATCGAAACGTCCAAGTTTGTTACCGGAAGTGTGATCGCTATCCTGGGTGCAGAGAAAAATGATGGTAAATTTACCGTGGAGGATTTTTGTTCGGCTGATCTGCCGCCTCAGACGCCCAGAGAACCTTTAAACGCAGACAGGTTCGTGCTCCTGGCTTCGGGTCTGGGGTTGGGCAGCAGCAAAGCGGAGAGCATGCTGGGATTGCAGCTGCTGGTCGACACGGTAACGGGTCACCTCGGCGATGTAGGGGAGCAGAGCGGGGCGGCGTCCATCTCTCGCGTCCTGTTGGCTGGAAACCTGCTGAGTCGAAGCACACAGGATAAAGACTCCAGCACGAAGGCGAAGTATCTGACTAAGAAGACGCAGGCAGGAAGTGTGGAGGCCATCAGACTGCTGGATGAGCTGCTGGTTCAGCTGGTGGCCTCCGTAGCAGTAGACGTGATGCCGGGAGAGTTTGACCCCACTAACTACACTCTTCCTCAGCAGCCCCTGCACAGCTGCATGTTCCCTCTGTGCGGCTCGTACCGAACCCTGCAGCTCGTCACGAACCCGTACCAGGCCGTGGTGGACGGCGTACGttttctGGGCACATCGGGACAGAACGTGAGTGACATTGTGAAGTACAGCAGCGTGGACGATCACCTGGAGATTCTGGAGAACACGCTGCGACTCCGACACCTCGCTCCTACCGCACCTGACACGCTGGgTTGTTACCCGTTCTACCAGAAGGACCCGTTCATCCTTAGTGAGTGTCCTCATGTGTACTTCAGTGGAAACGCTCCGAGCTACCAGTCCAAACGCATCACAGgtGCTGAAGGTCAGGAGGTTCTGCTGGTGACAatcccagaattcagcagcacgcAGACGGCCTGCCTCGTGAACCTACGCACGCTCGAGTGCGAGCCAATCAGATTCTCCGCCTTTTCCAGcgaggatgatgatgagagcGAGATGAACGTCAGCCACTAAACTTAGACAGTGCACAaaatgtagggttttttttgttttttttttctctagagAAACCTCAGTGATTGGCAAGAAAAATTCAgtattgaaataaaaacacGTAGCAATGGACGAGGTCATGGTACCTGAGCAGCAATATGTTAATAATTACTCAAGTAATTAAGACCGTAAATAGGCCTCTAGGTTTACTGGCAAGTAAAGTACGTCAGAAAATAGGGTTGGTAAACATCATATCCATCTTTCTGTAATGAGAATCATCTGTTTTGGTAAACAAGATCAAACTCTGAAAAACTATAAACAAGCCTTTATTGGATGAAACAACAAGTCCATTCGACCTCGAGGTCTCTCTGAGAGAAACATCTCCTGTAGACATTGAGCAGTGCTGACAGAGTTGCTTACTTGTGTGAaagaagtgtaaataaaatcactttttttgta

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02328 POLD2; DNA polymerase delta subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166398 lncRNA upstream 1274 29158731 ~ 29166206 (+) False G140830
TU166396 lncRNA upstream 1349 29159129 ~ 29166131 (+) False G140830
TU166397 lncRNA upstream 1349 29159129 ~ 29166131 (+) True G140830
TU166319 lncRNA upstream 364309 28748834 ~ 28803171 (+) False slc7a4
TU166297 lncRNA upstream 419025 28640639 ~ 28748455 (+) False G140759
TU166461 lncRNA downstream 61069 29239482 ~ 29246316 (+) True G140884
TU166491 lncRNA downstream 118637 29297050 ~ 29297797 (+) True G140910
TU166505 lncRNA downstream 154001 29332414 ~ 29351756 (+) False LOC117597881
TU166544 lncRNA downstream 242467 29420880 ~ 29421294 (+) True G140935
TU166562 lncRNA downstream 325270 29503683 ~ 29504872 (+) True G140943
XM_034307003.1 mRNA upstream 2492 29153546 ~ 29164988 (+) True sf3a1
XM_026945841.2 mRNA upstream 364306 28788408 ~ 28803174 (+) True slc7a4
XM_026945691.2 mRNA upstream 672447 28468419 ~ 28495033 (+) True glt1d1
XM_034306291.1 mRNA upstream 754321 28325620 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034307008.1 mRNA downstream 128598 29307011 ~ 29313313 (+) True bag4
XM_034307010.1 mRNA downstream 128604 29307017 ~ 29310787 (+) False bag4
XM_034307007.1 mRNA downstream 128605 29307018 ~ 29313313 (+) False bag4
XM_034307009.1 mRNA downstream 128605 29307018 ~ 29313313 (+) False bag4
XM_026945870.2 mRNA downstream 137406 29315819 ~ 29318495 (+) True LOC113546128
XR_004578633.1 other upstream 1140030 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1738003 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 2437649 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2600717 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2690021 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 309560 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 310136 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 310929 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 311107 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 311702 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile