Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026945800.2 |
| length | 597 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC113546087 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 29899457 ~ 29903243 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005751 | mitochondrial respiratory chain complex IV | cellular_component |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| id | description |
|---|---|
| K02266 | COX6A; cytochrome c oxidase subunit 6a |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU166562 | lncRNA | upstream | 394585 | 29503683 ~ 29504872 (+) | True | G140943 |
| TU166544 | lncRNA | upstream | 478163 | 29420880 ~ 29421294 (+) | True | G140935 |
| TU166505 | lncRNA | upstream | 547701 | 29332414 ~ 29351756 (+) | False | LOC117597881 |
| TU166491 | lncRNA | upstream | 601660 | 29297050 ~ 29297797 (+) | True | G140910 |
| TU166461 | lncRNA | upstream | 653141 | 29239482 ~ 29246316 (+) | True | G140884 |
| TU166938 | lncRNA | downstream | 16489 | 29919732 ~ 29937740 (+) | True | G141242 |
| TU166944 | lncRNA | downstream | 34265 | 29937508 ~ 29954068 (+) | False | G141247 |
| TU166928 | lncRNA | downstream | 46615 | 29949858 ~ 29968041 (+) | True | G141235 |
| TU166943 | lncRNA | downstream | 48522 | 29951765 ~ 29954068 (+) | True | G141247 |
| TU166930 | lncRNA | downstream | 61524 | 29964767 ~ 30022919 (+) | True | G141236 |
| XM_034306781.1 | mRNA | upstream | 12102 | 29878359 ~ 29887355 (+) | False | prkab1b |
| XM_034306783.1 | mRNA | upstream | 12102 | 29878376 ~ 29887355 (+) | True | prkab1b |
| XM_034306784.1 | mRNA | upstream | 12102 | 29878497 ~ 29887355 (+) | False | prkab1b |
| XM_026945697.2 | mRNA | upstream | 23177 | 29860188 ~ 29876280 (+) | True | LOC113546008 |
| XM_034306270.1 | mRNA | upstream | 54987 | 29820503 ~ 29844470 (+) | True | msi1b |
| XM_034306906.1 | mRNA | downstream | 270 | 29903513 ~ 29929070 (+) | True | LOC113546064 |
| XM_034306694.1 | mRNA | downstream | 6734 | 29909977 ~ 29910952 (+) | True | LOC117597833 |
| XM_034306907.1 | mRNA | downstream | 27006 | 29930249 ~ 29932961 (+) | True | LOC113546086 |
| XM_034306693.1 | mRNA | downstream | 29723 | 29932966 ~ 29946606 (+) | True | hnf1a |
| XM_034306392.1 | mRNA | downstream | 125618 | 30028861 ~ 30040856 (+) | True | ggt5a |
| TU166912 | other | upstream | 23191 | 29860261 ~ 29876266 (+) | False | LOC113546008 |
| trnar-ucg_4 | other | upstream | 409270 | 29490115 ~ 29490187 (+) | True | trnar-ucg_4 |
| trnag-ccc_2 | other | upstream | 409867 | 29489520 ~ 29489590 (+) | True | trnag-ccc_2 |
| trnar-ucg_3 | other | upstream | 410043 | 29489342 ~ 29489414 (+) | True | trnar-ucg_3 |
| trnar-ucg_2 | other | upstream | 410836 | 29488549 ~ 29488621 (+) | True | trnar-ucg_2 |
| TU166919 | other | downstream | 285 | 29903528 ~ 29924206 (+) | False | LOC113546064 |
| TU166932 | other | downstream | 5172 | 29908415 ~ 29926735 (+) | False | LOC113546064 |
| TU166933 | other | downstream | 5172 | 29908415 ~ 29926735 (+) | False | LOC113546064 |
| TU166924 | other | downstream | 6786 | 29910029 ~ 29929154 (+) | True | G141234 |
| TU166920 | other | downstream | 22334 | 29925577 ~ 29926469 (+) | False | LOC113546064 |
