RNA id: XM_026945801.2


Basic Information

Item Value
RNA id XM_026945801.2
length 1579
RNA type mRNA
GC content 0.54
exon number 4
gene id tubb2b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27598414 ~ 27601456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTGTTTTCCGCACTTCTGTAGAAGAATAAAGGAAGGACAGTTTGCATTTCTCAGACTGAACTACCtctgaaaaaaagcaaaaatgaggGAAATCGTGCATCTTCAGGCTGGTCAGTGCGGTAACCAGATCGGAGCCAAGttctgggAGGTTATTAGCGATGAGCATGGTATCGACCCAACTGGCACATACCATGGAGACAGTGATCTCCAGCTGGACAGGATCAATGTCTACTACAACGAGGCATCCGGTGGCAAATACGTGCCCCGTGCTGTGCTGGTAGACTTGGAGCCTGGTACCATGGACTCTGTGAGGTCTGGACCTTTTGGTCAGGTCTTCAGACCAGACAACTTTGTCTTTGGTCAGAGTGGTGCTGGAAACAACTGGGCCAAGGGCCACTACACAGAGGGAGCCGAGCTTGTCGACTCTGTGCTGGATGTGGTGCGTAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGGCTTCCAGCTCACCCACTCCCTGGGTGGTGGCACTGGCTCAGGTATGGGCACTCTGCTCATCAGCAAGATCCGTGAAGAATATCCCGACCGTATCATGAACACCTTCAGCGTGGTACCCTCGCCCAAAGTGTCCGACACCGTCGTAGAGCCCTACAACGCCACATTATCCGTACACCAGCTGGTCGAAAACACAGACGAGACCTATTGTATTGACAACGAAGCTCTGTACGATATTTGCTTCCGCACACTGAAGCTCACGACACCCTCATACGGTGACCTCAACCACCTCGTGTCGGCCACCATGAGCGGCGTCACCACCTGTCTCCGTTTCCCTGGTCAGCTCAACGCAGATCTGCGCAAACTGGCCGTCAACATGGTGCCCTTCCCACGTCTGCACTTCTTCATGCCCGGTTTCGCCCCACTGACCAGCAGGGGAAGCCAGCAGTACCGCTCACTCACAGTGCCCGAGCTGACACAGCAGATGTTCGACGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGCCGCTACCTCACTGTTGCTGCCATCTTCCGTGGCCGCATGTCCATGAAGGAAGTCGACGAGCAGATGCTCAACGTGCAGAACAAGAACAGCAGCTACTTCGTCGAATGGATCCCCAACAACGTCAAGACCGCTGTGTGCGACATCCCACCACGTGGCCTCAAGATGGCCGCCACCTTCATCGGCAACAGCACTGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACTGCCATGTTCAGGCGCAAAGCTTTCCTGCACTGGTACACCGGCGAGGGTATGGATGAGATGGAGTTCACCGAAGCCGAGAGCAACATGAACGACCTGGTGTCCGAGTACCAGCAGTACCAGGACGCCACAGCTGAGGAAGAGGGCGAGTTtgaagaggaaggagaggaggagcTTGCGTAAATCTtgcttgtgtatatgtgtatgtgccaagctgtaatattttctgacctacctgaaatgaaaacctttcCAGAGTTCAGTTTGTGTTGTTCTGCTGTCCATTCCTTTTCTGTACAGAAACGTGTCATTAAAATTCTCTTTTGTTAAAGTGGTAAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165143 lncRNA upstream 29329 27560390 ~ 27569085 (+) True G139807
TU165111 lncRNA upstream 107953 27439761 ~ 27490461 (+) False nr6a1a
TU165108 lncRNA upstream 109168 27428636 ~ 27489246 (+) False nr6a1a
XR_003404686.2 lncRNA downstream 2461 27603917 ~ 27610560 (+) True LOC113546137
TU165554 lncRNA downstream 9491 27610947 ~ 27611335 (+) True G140170
TU165666 lncRNA downstream 170988 27772444 ~ 27773644 (+) True G140236
TU165668 lncRNA downstream 173281 27774737 ~ 27851332 (+) True G140237
TU165687 lncRNA downstream 242438 27843894 ~ 27859701 (+) False dbnlb
XM_034306400.1 mRNA upstream 10010 27581808 ~ 27588404 (+) True fgf17
XM_034306401.1 mRNA upstream 10010 27581808 ~ 27588404 (+) False fgf17
XM_034306402.1 mRNA upstream 10010 27581808 ~ 27588404 (+) False fgf17
XM_026945915.2 mRNA upstream 67506 27510703 ~ 27530908 (+) True nr5a1a
XM_034306583.1 mRNA upstream 110605 27405450 ~ 27487809 (+) False nr6a1a
XM_034306758.1 mRNA downstream 77459 27678915 ~ 27698868 (+) True fkbp15b
XM_034306759.1 mRNA downstream 77459 27678915 ~ 27698868 (+) False fkbp15b
XM_034306760.1 mRNA downstream 77459 27678915 ~ 27698441 (+) False fkbp15b
XM_026945829.2 mRNA downstream 221081 27822537 ~ 27831378 (+) True ube2d4
XM_034306669.1 mRNA downstream 236789 27838245 ~ 27859702 (+) False dbnlb
TU165116 other upstream 168937 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 868583 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1031651 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1120955 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 1121537 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 418015 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1886517 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1887093 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1887886 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1888064 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile