RNA id: XM_026945870.2


Basic Information

Item Value
RNA id XM_026945870.2
length 1150
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113546128
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29315819 ~ 29318495 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCAGCCAACTTCTAGAGCCGAGTCCTAAAATAACCCGGTTCCCCGGGAGTGTGTACCAGCCATGTGAACGCTGTGGATCTACAACTTCAAACTGACAGCAATGAAGTGACTTTCAGTCGCGGAGTCCTCAAGTCTTCGGATAATTAATATCAACTTCTCAGATTTCATCACCAAAGTTCAGCTCCAAATGTCCTACAGGTCCAAATATAACGATTCACGCTCTGCGAAAATAGAGATCGATTTCACCTCGCCTGTTATGGCAGTGATGGGAGTCGAGCAGCTCCTGTTTTCCGGGAGAGCGATCAACAGTCCTGCTAATGAGGTCTGGCCCAGACTTTATATAGGAGACATGGGTTTCGCAGAGAATCGTGCCGGGCTTCGCAGGCAAAACTTCACTCACGTGCTGAACTGTGCTCACAGCTCCAGGCGAGGTGACGACTTTTACTCCGGAATGGGAATCACATATCTGGGCATCGAAGCTCACGACTCTCCTGCCTATGACATGAGCGTCAACTTTAATACAGGAGCAGAGTTCATTCATAATGCGCTCAGGACGGGAGGGAAAATCCTGGTGCACTGCCACGTGGGCGTGAGTCGCTCGGCCACCATCGTGCTGGCGTACCTGATGCTGAAGCACAACATGACCCTGGTGGAGGCCATCAACACGGTTAAACAAGGGAGAGGGATCATACCCAACCGGGGCTTCCTCCGACAGCTCGTCGACCTGCACATCAAACTATGTACGGCTACAGATCCTGAGTGCGTGACCACGCCTTCCCAACACCTGACTGTTCAGGAGAGACTTCGCGGGAATGAGATAATGGTGGTTTGGAAACGTACATAGTACATTAGTTACTGTTTCTAGCTTCTGAGATGGTGGAGGGTTATTTAGAGATGTGGGTCGGCCCTGATATAAAGAGctgtattttataatgtttataaacagccaattttataatgtattgttatttaattgACAGTAAAGCAGTGCTCTGTGGTAAAAAGGCAAACATGGCGGGTTtgattcatgctttttttttttggtaattttcttttctcaacAGTGTGTTTTTCCCCACGGATGATTCCCTGATATATAATTTGAAAAATGGTGTTTAactcattaaatattttcttattgAAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166491 lncRNA upstream 18022 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 69503 29239482 ~ 29246316 (+) True G140884
TU166398 lncRNA upstream 149613 29158731 ~ 29166206 (+) False G140830
TU166505 lncRNA downstream 13919 29332414 ~ 29351756 (+) False LOC117597881
TU166544 lncRNA downstream 102385 29420880 ~ 29421294 (+) True G140935
TU166562 lncRNA downstream 185188 29503683 ~ 29504872 (+) True G140943
TU166938 lncRNA downstream 601237 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 619013 29937508 ~ 29954068 (+) False G141247
XM_034307008.1 mRNA upstream 2506 29307011 ~ 29313313 (+) True bag4
XM_034307007.1 mRNA upstream 2506 29307018 ~ 29313313 (+) False bag4
XM_034307009.1 mRNA upstream 2506 29307018 ~ 29313313 (+) False bag4
XM_034307010.1 mRNA upstream 5032 29307017 ~ 29310787 (+) False bag4
XM_026945780.2 mRNA upstream 137406 29167480 ~ 29178413 (+) True pold2
XM_034307021.1 mRNA downstream 527 29319022 ~ 29325104 (+) False rsph14
XM_034307022.1 mRNA downstream 662 29319157 ~ 29325104 (+) False rsph14
XM_034307018.1 mRNA downstream 1781 29320276 ~ 29325104 (+) False rsph14
XM_034307015.1 mRNA downstream 2019 29320514 ~ 29325104 (+) False rsph14
XM_034307016.1 mRNA downstream 2029 29320524 ~ 29325104 (+) False rsph14
XR_004578633.1 other upstream 1288369 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 1886342 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 2585988 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 2749056 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 2838360 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 169478 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 170054 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 170847 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 171025 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 171620 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile