RNA id: XM_034306972.1


Basic Information

Item Value
RNA id XM_034306972.1
length 6882
RNA type mRNA
GC content 0.51
exon number 23
gene id rimbp2
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26626053 ~ 26729946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGCTCCCAAAACCGGCCAAGCGACCCGCGGATATTTgccctttttttccttccccatcaacaacaacaacaacaacaacaacaacaacctcacAGTCCGGCGGCGCAGTAGGATACGGCAGCGCTCACACGGAAAGGGGGGGTCGGAGCCGCCGTTATTAACGGACGCAGCGCAGCGGAGGAAGCCACCGAGCAGACAGaagCTGAGGACCGACGTGCTCCTGCTGCACAGAACAGATTTTCAGCCTCAGCACGTAAAGGCGTATCGTCTCCCAGAGGAAAGACAACACGTCCCTCTCCTACAGCAGCACAGCCTACAGGAGACGGAGATCAGCAAGAAGAGAAACGAGTGCGACGTTCTCGAAGAGGGGGTGAAGAAAAAGAGCCAGTCATGTCAAACCTTGGAGAGTGAGCTCCAGAATGTTTTGCAGAGGAAAACGCATTTAAATGTGCACTCACTCTCCGACATCCAGAAGACCACAGAGTGTGAGCAGGTGAAGTATGAGTATGAGCGCCTGTGGGAGGCTCTGTGTGCAGTGACTGTGGAGAGAGATTGTGCTCTGTGGGAGAGGACTCAGCTCCAAGGCAAGCTGGAGAACCTAGAGCAGGTGCTGAAGCATATGCGCGAGGCTGCTGAGAGGCGGCAGCAGTTAGAGTTGGAACATGAACAGGCCCTGGCCGTCCTCAGTGCCAAGCAGCAGGAGATTGACCTTCTGCAGAagGCTCAGGTTGAGGCAAAGAAGGAACATGAAGGCGCCGTCCATTTGTTAGAGGCGAAGGTGAGGGAGTTGGAGGAGCGATGTCGGACTCAGAGCGAGCAGTTTAACATGCTGTCGAAGGAGTTGGAGCGCTTCAGGCTGCAGGCTGGGAAGTTGGACCTGCTCGGCTCCGGACAGCTGACGACGGGAGGAGACTCGCCCGACTCGCCCAGCAAAACATCTTCACTTTGCTCGCTCCTCAACGGCCTGGGCAAGgGCAGTGAAGGCTCCTTGAGCAAGTCTGTGATCTCGGAGTTCATTCGACCTCTGCAGATGAGCGCAGGAGAGAAGGCAGAGCTGCTGTCCATCAAACCCAGCTTCCTGTCCCGGAGCACACCCTCCAGCCCCCGGCGAACCTGTCTCTCCGAGGTCCGACCGATCTTCACTGCTGCTatggagagagagcTGAACCTGTCTCCTCGTGCCAAGCCCAGGTTAGCGGGAAAGGTCCGGCTGTGTGTCGCCCGCTATAATTATAATCCATATGATGGCCCTAATGAGCATCCTGAGGCTGAGCTCCCCCTGGTGGCCGGGAAGTACCTTTACGTTTACGGGACCATGGATGAAGACGGCTTctatgaagGGGAGCTGCTGGACGGCCAGCAGGGCCTCGTCCCTTCCAACTTCGTGGACTTCGTCCATGACGACGACTTTGCCTCGTCTTCGAAAGAACCGTCCTACCTCAACTTCACCTTCAACCACAGCAGCAGCCCAGCGTCAGTACCGAGCAGCGCAGTGAGCACGCTCAGTACACTGCTCTCTGAGAAACTGGAGGCCCTGAGCTCCTGCACGGGCACGGGGAcgagcagcagcagcggcgTTAGCAGCATGGGAATGGGCGTCGAGCTGGGCGTCATAGGTTCTGGCTTGGCCAATGAGCCCCTGGCTCCCTGTGGCACGAGCTCGGGCACGGCCATGCTGGATGTGAGCGTGGATGAAGTCGGAGAAGACGTAGTGCCTTACCCACGGCGCCTGTCACTCATCAAACAGCTTGCGAAGAGTGTGATCCTGAGCTGGGAGTCTCCTCTGGTGCCACCCAGCTGGGGATCCATCAGCAGCTACAACGTGCTCGTGGATCAGGAAGTGCGCGCCAGCGTGCCATGCAGTGCTCGCACCAAGTTTCTAGTGGAGAAGCTGAACCTGGCATTACGCGCCCACCGTATTTCGGTGCAGAGCGTGACGGAGCGCGGCGTCTCAGACCCACTGCGCTGCACGCTGATGGTCGGGAAGGACGTAACGGTGGCACCGTGCCAGCTGCGTGTCGACAAGGTGGCTCAGAACTCAGCCGAGCTCTCCTGGATGCCCAGCGACAGCAACTACAGCCACACCGTCTTCCTCGACGGATCCGAGTATGACGTGGTCAAACCAGGAGGGTACAAGTACCGCTTCTACAACCTCAAACCAATGACTGTGTACAAGGTGCGCGTGGTGGCAAGACCGCATCAGATACCCTGGCACTTACCTTTAGACcagagagagaagatggagaCCACGGTGGAGTTCTGCACTCAGCCTGCTGGTCCGCCGTTCCCTCCGCAAGACGtccaggtgcattgtgggacaTCACCGGGGGTGCTGCAGGTGCGCTGGAAGCCCCCTCCTCTCACACCAAGCGGCACCTCCAACGGCGCCAACGTCATGGGCTACGTGGTCTGCACCAAAGGTCAAAAGATCGCAGAGGTGATGTTCCCCACAGCGGAATACGTGACAGTGGAACTGAATCGTATCCAGTGTCTGGAAGCACGTGAAGTTGTCGTACGCACCATCTCAGCTCAAGGCGAGTCGCAAGACTCCAACGCTGCCTCTATCCCACACAACCTACTGCCGCCTCCACCCCAGTCGCACCCTCACCCATCCCCCTTTCCCCCAAACTACCCACAGAGCTTCCCCCACCCACAACCAcaaccaccaccaacaccaacgccacacacacagccacctCCTCCTCACCCTCAACCTCAGATCCACCCTCCACCCTCTGCTCAGCCTTTCCCCAAACCCAAACTCCTCCCAAGTGCCCGAGATGCCCACGCCAAAGAGCCAGAGGCAGGCAGGAGGCAGTGCCAGCCATGGGAGCCTCACCAACGAGCCCCATCGCCCCTGCCACCCCCAACCGCCGGGGGTCCTGGACTGGAGCCGCCAGTACCACCACCGCATGTGGCCCAGAGGATCCTGCCCCAGCCTCAGGGAACGCCAATCTCCAACACGGTGGCACGCGCCATGGCGAGGCAGGCAGCCCAGAGACAAGGCACCAACCACAAGccgGAGAGAAGGAACATCTTCAGTGAGAGGAATAATACTCCTCACTCCGACGAGGAGGACGATGTTTACGACTCGTCCCACACCAGGCGGAGAGGAGCCTCGGTGGACGACTTTCTCAGGGGCTCTGAACTGAGCAGACATcaccACCACTACTCCCACAGCGAGGAGTACTACACGGAGAGCAGCCGAGGTTCGGATCTGTCCGACATCatggaggaggacgaggaggagctCTACTGCGAGATGCAGCTGGAGGAAGGCCGCCGGAGGAGCATCAgctcacacaacacactgaagATTTTAGGGAACTCTTCCTCCATGGGACGCTCGGATCGACTGGAGCAGTCCAGCCGTCGGACGAATCATGGATGTCCTCCCCCTCAGAGAAGGCCCATGATGGTTCCTTCCATTGgCGGTTACAGAGGACGGGACAGACGCTCACCAGACTACTTTGATGAGTCGGAGACGGACAGCATGGCCAGGATTTTTGTAGCTCTGTTTGACTACGACCCCCAGTCCATGTCCCCAAACCCTGATGCCACAGTAGAGGAGCTTCCCTTCAAAGAGGGCCAGATCATAAAGGTGTTTGGAGAGAAGGACATGGACGGGTTCTACAGAGCGGAAGTCTGTGGCCGGAGAGGTCTCGTTCCGTGTAACATGATATCTGAGATCGAGACGGAGGACGGCGAGATGATGGACCAGCTTCTTCAACAGGGCTTCCTACCACTGAACACACCAGTCGAAAAAATCGAGCGGAACAGGAGGAGTGGACGGCACCCGATGTCCACGCGCCGGATGGTGGCTCTGTATGACTACGACCCCAGGGAGAGCTCGCCAAATGTAGATGTAGAGGCTGAACTGACCTTCTGTGCCGGAGATGTGATAATGGTGTTTGGGGAAATCGATGAAGACGGGTTTTATTATGGTGAATTGAACGGGCACAGAGGTCTGGTGCCCTCCAACTTTCTGGAAGAAGTGCCTGACGATGTGGAGGTTTTCCTCACCGAGCCACAGGATCACCCAGGCAGGACCAAGAGCAAAAGGAAGAGCGTTCATTTCACTCCGTAACGGCTCAGTGCACCTCACGTAAGTGAGCGACTGATGATACCAAGACTAACACTGTCCTCGTCTAATGCAGGTGACATGGGTAGGCCTTTAATGTTTACCCCCTGACAAAggggtgtatacacacacacatacacacaaacacacacacacacacacacacacacacacaagtcagcAATGTACAGACCAAGACATGCAATATAGACACGctttacatacacacagctcTAAAGACAcacattgttaaataatatgtaaaagcTACATAGTTAACTTGTTACTCAGGCATCGACACATCACATGATCTCAGTAAGAAAATACAACTTTATGATGATAATATGATGATATTAACGGAAtggtttggtgaaaaaaaattcaatttacaCAATATTCTACTTAACCTAAATGTAGTCTATCAGCCAAGCTGTCTGGGTTAGTTTTTGtcctttagttttgcactggaaaTCCAAGTAGGGGTTGCACAAATGCTAATTTTTACTAGtcaatgattatttaaaaaaaaaaaaaagtagttaacTAAAAGTAGTCTGTTGTGTTCTGTTCAGGGCATTGTTATTTTTAggatgttttatttgtgtagcaatGAACGTGTCAAACCACACTTCAGTTAACAGTCATACACAGGCTATAGGCTATGAACATTTCCAGTATGAGCCCTGGgatgagcaacaggacagtctttatgattacagcagcagatctTCAGGCAAAATTTTCCACGTCTTGGTTGACTGACTCCATTTGGGAAGTggaaattgtgtaaattaaaaaatatcttcACATGAGGCAGTAGtaggtcagtggttaaggttctgtaATCAGATGGTTGTGAGTTTGGATCCCATCACTGCCAGACAGTCACTTAAATGCATAAAACGcataaaacatacacacctCCTCCTTCACAGATCAAGCACTTTATTTCATGTTACACTGCAGTCATTAATACACTCTCACCGGCACTTCTAGCCACACTCTTGCTACCTCACATTTATTGACTCCTTGCCTGTGATTGGACGAACAGAAAGCAGAGATTGTTCTGCTCAAGTACCATGAGAAAGTGAAAACCCGCAAACTCTGCATTAGACGGGCCGAGCTGGTATCTTCAGTCGGTTCTCTGGGTGTTTGTACATGACAGTGTCCGTCTCATTGACTCCTGCTGTAACTCATGACTCAAGCTACATGGGCGCTGTTGCACAGCAGAGGTCCGAGTTTGAgctccctctttccctccctccctcttcgACCCCCGTAGCGTGGACGCCCCTGTAGTAGAAACGAACCCTCCCTTCCCGGCGAGAAGCTGTGCACCAGACAAGATCGCACTTAcctaaaatgagcaaaatggaATTGGCACATTTTTAATGCATCATGGAGTGATGTCTGGGGTGCGGTTTTGCTCCAAGGAACGGCAACAAACACCAATAAAACATCATTTCTACCCCTTTTAGAGAGTAGATTTCCACCATCAGCATTAgtttgtcacatttttttcttctcattttagTAGTTTTTAGTCAATTAAGATCTTGACATTtgtaaatgaagtgtgtgtttaaagcagGTTTGATTTGGCTTCAGGTCCCTTGGCGAAGTTACCATGCAGAAAGGTGATAGATTACATCAGAGACTGGTAAATTAAACACTcgtctttttctctttatcaccattaatttgataaaatatacacatttccCCCATGCCCCTGAAGGTGTGATGTAGTAAATGATATAGAAGGAATTGTGAACTGTGTTTCCTGGCCTTCATTACAGCAGAGTGATATTTAGAACGGAGTGAGACTGAGACATCCGTCATTTAGGTTTTGTCCCTCTGTGTGTAAAAAACAATGACAGCTCTGTAGTAATCATAGATAAACATATTAGACCACTAGATAGTGAAATAAGTGTCCTTTACTGACTCACACTGATTTTTGCCAAGgtatttttttaagataataTTTTTCTGCTGAGAACAAGTGCattttatggggaaaaaaaaacaactcagaGGTCTATCTTACCATAATACGCAATCTTTTAAATTGGATTGGATTGGTAAATTTGCTAAGGTGTAAATTTTTCTCTCAATACAGCTTATCTAGACATTTGTAAGCTAACATCAGTGACTCTCATAACTTTTACaacaaaatgtacaattattAAATTTAGGCGATGTTGCTATAAAAcatcccagttttttttttgtccagctATCTCCATGTCTAATGTGTATATCTATGATCCCAATCCACATTGTACCACATTAAGACAGACAAGAAAACtgtgtataatattattattattattattattattattattatagaaaccAGAATATTCAAAGCAcctttttatgcattttcaaTCTCTCTCAATCGTAGCATTTGcatcacaaacacatttttttaatgaagaggAGGGGAAGGGAATACTTTTTCCGTCTATTTTGAACATACAGACAGTGAAGCTGTATACACAGTTGTTCTGTGGAGGGACTTTCTCCCTGTGTACTGTACGGTGGCCCTGCTGGGACAGAAAGGACTTGATGGAGATGGAGGGTTGGATGTGCAGTGGGATGCTGTGAGAGAAAATCAGAAacaatgacagtttttttcCTGAACTGTCCCTTACGGGTCTCCCATTAGGTTCCTGTGGAAAAAGCAGGGGGCTCTCCGAGACGAAGCACCACCTCCATGGTGCGCCCCCACGTCCAAGGCTCTGGCCCCGCCTCCCAGGGGCCAGGGAGCCCCGCTGCGCGACGGCCCCGAGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164826 lncRNA upstream 106571 26512892 ~ 26519482 (+) True G139551
TU164785 lncRNA upstream 202359 26400191 ~ 26423694 (+) True car15
TU164434 lncRNA upstream 589920 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 675604 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 811012 25810175 ~ 25815041 (+) True G139172
TU164945 lncRNA downstream 148690 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 161131 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 376983 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 376983 27106929 ~ 27108878 (+) False G139686
TU165045 lncRNA downstream 453075 27183021 ~ 27261741 (+) False fam160b2
XM_026945913.2 mRNA upstream 6351 26604521 ~ 26619702 (+) True stx2b
XM_026945914.2 mRNA upstream 6351 26604521 ~ 26619702 (+) False stx2b
XM_034306989.1 mRNA upstream 9975 26604521 ~ 26616078 (+) False stx2b
XM_026945698.2 mRNA upstream 23813 26592058 ~ 26602240 (+) True piwil1
XM_026945700.2 mRNA upstream 23813 26592191 ~ 26602240 (+) False piwil1
XM_026945890.2 mRNA downstream 5436 26735382 ~ 26787981 (+) True adgrd1
XM_034306946.1 mRNA downstream 5436 26735382 ~ 26787981 (+) False adgrd1
XM_026945892.2 mRNA downstream 5436 26735382 ~ 26787981 (+) False adgrd1
XM_026945893.2 mRNA downstream 5436 26735382 ~ 26787981 (+) False adgrd1
XM_026945894.2 mRNA downstream 5436 26735382 ~ 26787981 (+) False adgrd1
TU164841 other upstream 59290 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 148594 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 149176 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 149703 26476278 ~ 26476350 (+) True trnaa-agc
TU164784 other upstream 168777 26454622 ~ 26457276 (+) False car15
TU165116 other downstream 698781 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 1289525 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2758027 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2758603 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2759396 29489342 ~ 29489414 (+) True trnar-ucg_3

Expression Profile