RNA id: XM_026945891.2


Basic Information

Item Value
RNA id XM_026945891.2
length 5162
RNA type mRNA
GC content 0.45
exon number 26
gene id adgrd1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26735382 ~ 26787981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGAAGGTCTCGCGTGGCTGCAGCGCGAGCGCTTGTCAGTGAGCTTCACTCCTGAGAGGATTATGTTGTTTGACAGAATGGATTAGGagtgaaaaaactttttttttttgaaggaaaagaaaaaaaaaacaagaagaagtagaagaaaaaACGGAGTACGAATGTTCTGGATAATTATTTTTGACTTTGCTTACCCGTGTGTGCCTACTGTATAATAGTTTTTTTTGGTACTTTATATCAGTTACAGGACCAGATGATCGATTTTGACCGTTTTTTCCGTTGAAACTCTCACGAGCGCGCGATGGACAGTAGCTAGCTTAGCTACCAAACTCTGAAACTCTTTTCTTAACGGTTAAATTCGACATTTTTTAAACGATGGACTTTCtatataaagttttaaaattttctaCTTTTGTCAGCGTCCTCCAGGTACTTGGTGACCAGGCTGTACCGTCCAAGCATCCAGgcCTGGATGTGCTGGCCACAGCGTCACACTACTGGCCCCTGGATGATGTAGACGGGATCCGCAGCCTGAGGGACCAGATTGGGAATAGAACAGCACTCAGAATCCACAACCACACTGTCCTGCCTACGCATAACTCTTCCTCTGTGTACACCAATGACTCTGCCTACACTAATATTTCCGTCTCTGTAGACATCGTAGAAGGAGTTGTGAACAAAGGCATCTATCTGAACGGAGACCGTGGAGCCACTTTCCTCCATTTCGGCAACTACAAGAACTCCTGCATCAGTGACCCCACTCTGTGTGGACCGCAAGGGATCACATTCTCCTTCTTCTGGAAGAACCAGGAGTCACATTCCCGCTTTGCTGTGATGTCAGGAGGGAAAATCATCTCCAACGGTTTCTCTGTCTACACCAACCCCTTGGGAGGATACGTGGAGTTCTACACCAGGAGAAACACTCAACGCTGGAAAGCAAATATCAACCTGCCAGGACCTTTCTGGACACACATCCTATTCACGTGGACCCTTAAAGACGGCCTGAAGATCTACATAAACGGCACGTTCAACATTGGCGACCCGAAAGGCGACGTGTCGCAGAATTACGGCGATACGTACGCAGATTTGGTGATCGGAACCGGACACACCCACTCCTATAGGCAATACGTCACCGCGTCCTTCGATGAGTTTGTCATTTGGGAGCGAGCTCTTTCACCCAAAGAGATCTGGCTCTACTATAAAGCTGCCatagGTGAGGATGTGGTTTATCCTCCAACTACAGAATCTCCTTCCTCCGTCCACACCACAACAGATGCCCTTTTGCAGGCAACAACAGCATCACCCCACCCCACTGTCTCTAACTTCACAGAGATTCATGATTCAGTGCCCATGTCACTGCAAAACTTCCTCCAGTCTTCCTTCATTCTGCCCAATAAGACTATTCCTAAGGATACAGCTCACAATCTGACACAGTCATTTCTGAAGAGCGTTGACGAGGTGATATCCTCCAGTAGCTGGCGAGAAGACGAGGAGGTACGCAGAAATGCACTCGCTACGTCATTACGCTACGTCAGTAAAGATCTGACGcAGTCGACTCCTGTAATCAGTGGACTCATAGACACAGTGGACAAAGTCATGGGGCACATGGTGTCCAATCTCGAGGCTAAACCAAATTCTCTTGTCGCTATTGGTGGAAAGAGCTATGTTGCAGATTACTCTCTGATGAAGATCCCGCAAAATTATAACATGCAGAACTACAGATTTCCAACACAAGGCAAGAACTACATCTCAGTGCCAGGAGAGGCCTTCACTACAGAATcCCAGACCACAATCGTAGGCCTTTTCTACCACAGCATGCACAGCTACTACACACAGATCAGCCCTCTGAGAACCagGATCAATGAGGCGGTGGAATTTAAGGACCATAAGATCCAGGTGGCCAGCTGTCTGATCTCGCTAAAGGTGGAGCCCTCTCCTGCCCTCTCGGTCAACCTGTCGTCAGAGCCACTGATCAGAATCATGCTGACACACCAACTGAGCAAAGAGCAACAACTTCAGGCCATGAACGAGAGCAACAAAGTCTTCCTCTACTGCGCCTTCCTGGATTACAGctctaAGGAAGGCGTATGGTCCAACAACGGCTGTCTGAGAGCTGGAGGCAACCTTTCCTACTCTGTCTGCGTGTGCAACCACCTGACTAACTTTGCCATCCTCATGCAGGTGGTTCCTGTGGAGCTCGCTAAGAGCCATCAAGTGGCTCTCTCCACCATTACCTATGTGGGTTGCTCCATCTCCATCTTCTGCCTGGCCATCACCTTGGTCACCTTCGCTGTGCTCTCgtctgtgAGCACCATCCGGAACCAGCGCTATCACATCCATGCTAACTTGTCCTTCGCCATCCTGGTGGCCCAGATCCTTCTGCTCATCAGCTTCCGCTTTGAACCCGGGACGTTGCCCTGTAAGGTGATGGCAGTGTTGCTTCACTTCTTCTTCCTGTGTGCGTTCGCCTGGATGCTGGTGGAGGGGCTTCATCTCTACAGCATGGTGATCAAAGTGTTCGGCTCTGAGGGCAGCAAGCACTTCTACTACTACGGCATAGGCTGGGGGTCCCCGGTGGTCATATGCGTTGTGTCCATAACGTCGTCGCTGAGCAGTTACGGAGAAGACGGAAACTGCTGGCTGTCTCTGAAGAACGGCGCTATATGGGCGTTCGTGGCTCCTGCTCTGTTTGTCATTATAGTGAATATTGGTATCCTCATTGCTGTGACGAGGATCATCTCCAGAATCAGTGCAGAGAACTACAAAGTGCAAGGAGATGCTAACTCTGTCAAgctcactgctAAAGCAGTAGCAGTCCTCTTGCCTATCCTGGGCATCTCGTGGACGTTTGGCGTTTTGGCTGTGAACGATCAATCCTTCCTCTTCCAGTATATGTTTGCGGTTTTCAACTCTCTGCAGGgcttcttcatcttcctctttcACTGTCTGCTAAACTCAGAGGTCAGAGCTGCTTTCAAGCACAAGACCAAAGTGTGGTCTCTGACCAGCAGCTCCATCCGCAACATCAACGTTAAGCCTTTCAATTCAGACATTATGAACGGTAACAGAGGGGGCGTGAGCCCAACAAGAATGAACACGTGGGACAAAAGCACCAACTCAGCTAATCGCATTGACCTGTCAGCGCTCTAAGAGTCAACGGACAATGGCTACTGAACACAAACGATCCACAAACGAACAGTGAAAGTCGTACTTCTCCTCAGATACACTGGCTGACTTAGCCACCGCTCCTTTTCACGACGACTCGGCGGTTTAATGACGTTCTTACGCGACCGGGTGAAGAAAAGACTACGGCTAGCAGCAGACTTTTACTGACGTCACTCTTTCTCACTGACACCACTCACTTTATGAAGACAAACAAGAGTTCAGAGCCATAAATAAGTCACAGATGAAAACACAAAACCCGTGTTGGATAACTATTTTCTGTTCAGTGTTCAACCACAAAGTGTCCTCCTCGTAACTCCAGCAGCTGCTGGATTCCACTGCTGTCTGTGACTTGACACTAAACTGTGACACAAGATGCGTCTCACTCGGGATGAGAAGTTTTTCCATTGTGCTGCCACTACATTGAGACCTGCTATTACAGCTCTCAGTCCTAGTCTTAGATTAGATGGAATGAAAATCAGGCCTGGGTTACGTGTGAGTTATGTAGTACTTTCCATTTCAAAGGTACATGAGCGTTTAGCTGGTGAAATTTCGTGGCTGAAGCAAAAGACATTCCTGAAAGAGGAACCAAATATGTAGCGTTCCATTGCTGTGTGTCCTTGACGGCGTCGTATTTCCTCACAGATATCGTGCTGTATGTTGTCCTCTTCCTACCGATATGTTGTGTAAATTATTGTCTTGACGTTGCTTTCAGAAATATCTactatttcatttcatgttttgtgttaAGAAATGTCTCCAGTACCCCCAAAGTCATTGTGACATGACAAAGTGATTACTGCTACTACGCCAAATCAACCATTAACTAAATTTTACATTCTTTAACTGGTTATCTAAGCTCCGAGGTGTTAGACATTGAGACCAATATAATAACTTATAGCATAGTGGAATATGTCTACATTTTGTCTACAGAAACGCGAATTTGGCCCATTGTAATTAGAACAGATCCGATACGTCAGACATTCTGACTGCATTGTCAAGAACAGCATCAGTTTTTGTGCCAAACGTAGCTtgtatgttaaatgttaaaatttagGTCAGGGTTTCTCATTTCCCTTAAACTATAATACTGTAGATGTTGTCTTGTACCATAAATATTTAAggtatataataatgtaattgtgACGTACACCTTGGGTTCTCACGCCAGAAGACATCTTGCCTTTCTTTATTTGGTCATAATTTCTTGTCTTCTGTAACACATTCACTCGGGTCTCtagtttgttggtttttttaatatatataatctaaATCTTATGTGTCTGTGAAGCAATTTGAAGCAATTTTTCTTCAAATGAAATCCTTGGTTCTCAGTGTACCGTGTTTCTGCTTCTTGGCCCTTTAAAAGTTTTATGCATTCTCATTCATTCTGCCCGACAACTGCGATAACTGGAATGACAGTGATTAGTGAACATGCTATGTGTGCACTACCGATCACTCGGCTTTCTTTCCAGAGATTTTTCTTAACAGGGACTGTCATTAGTTTCcatgattttttatttgttagtgAATCCCAAAGTAACTGTGTTACTTCTCAGTTATAATAGACTGTGATTATCATGTGGCAGGTTCTGTGCCTGGACCCAAATACACCAAATTCTGTCTATGAGGGAAAATATGTTGGAAGATTTTACAAAAGGCCAAGTTTTGAGTAAATTGTTGGACTTTTTTGGGCTCTTCTGACACAAGAAGAGACACCAAGATGTAGGACTGATGAATATATAGTATAAAGTTGATGATGAAGTGATGTACAGTTCATTAAGATAAACATTGTGTTTTGCATTTTCGTAAGACTAATAATGTGAGACTCTGTATTctgtgaagtgttttgttcctttgtTCCTTATTGCCAGTGTGGACGTCGTTAGAAATTAAAAGCAGTGTCATTTTCGGGTTCACATGGCGTACGTCATGACAAAGAAGGTGAGACTTAACTCTTTATTTATGccaatgtaaaaataaaactacatatactgtT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164826 lncRNA upstream 215900 26512892 ~ 26519482 (+) True G139551
TU164785 lncRNA upstream 311688 26400191 ~ 26423694 (+) True car15
TU164434 lncRNA upstream 699249 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 784933 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 920341 25810175 ~ 25815041 (+) True G139172
TU164945 lncRNA downstream 90655 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 103096 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 318948 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 318948 27106929 ~ 27108878 (+) False G139686
TU165045 lncRNA downstream 395040 27183021 ~ 27261741 (+) False fam160b2
XM_034306964.1 mRNA upstream 5436 26626053 ~ 26729946 (+) False rimbp2
XM_034306983.1 mRNA downstream 5085 26793066 ~ 26817793 (+) True ulk1a
XM_034306357.1 mRNA downstream 31976 26819957 ~ 26856983 (+) False ep400
XM_034306356.1 mRNA downstream 32066 26820047 ~ 26856983 (+) True ep400
XM_034306360.1 mRNA downstream 32066 26820047 ~ 26856983 (+) False ep400
XM_034306359.1 mRNA downstream 32066 26820047 ~ 26856983 (+) False ep400
XR_003404685.2 other upstream 5551 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 168619 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 257923 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 258505 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 259032 26476278 ~ 26476350 (+) True trnaa-agc
TU165116 other downstream 640746 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 1231490 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2699992 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2700568 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2701361 29489342 ~ 29489414 (+) True trnar-ucg_3

Expression Profile