RNA id: XM_026945913.2


Basic Information

Item Value
RNA id XM_026945913.2
length 3704
RNA type mRNA
GC content 0.43
exon number 11
gene id stx2b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26604521 ~ 26619702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttctcgcgcgcgcgcgctcgtTGCTCGCGTGAGCGGAGGTGTATGTGCGGCGCGCGCGCGCTCGGACGGCAGGAAGCATCACTCAGGCCGTTAGCGTCATCACCGTTACTTTACAACACATTTTACTAATTTTCTGATTAACTGCCGTCTTATAACGTTTACTTGACTGTTATTTTTGTCCGTTTTTATGTACCATCCGCCTGTTGATGTGTCACTCGGAGTTGGGATGGACTTGGGTGTTTTTATGGAAACAGACCGGCACTTTTTATTAgcaggaaaataacttttattcatttagagcttatttacaaaaatgagGGACCGTCTGGCTGAACTGAAATCTGGGAGGCCCAGCGATGAGGAAGATGGAAGTTTTGTGGTTCATGTGGATCAAGGCGGCTTTATGGAGGGCTTTTTCAGAAAGGTGGAGGAGGTCAGGAGCATCATTGATAAGATTTCCTCGCAGGTGAACGAGGTGAAGAAGAAGCACAGCATGATCCTCTCAGCTCCTAACCCTGATGAAAAGACCAAAGAAGAACTCGAGCAGCTGACGGTCGAAATCAAGAAAAATGCCAATGTGGTGCGGACCAAACTcaaaaCTCTGCAGCAGAGCTTGCCTCCCGAGGACCAAGCCAACCGTGCCTCAGTGGACGAGCGCATCCAGAGAACACAGtacACAGTCTTGTCTCGGAAGTTTGTGGAAGTCATGACCGAGTACAACAACACGCAGGTCTCCTTCAGAGAGCGCAGCAAGAGCAGGATCCAGAGACAGCTGGAGAtcaCTGGAAGGAGGACCACCAATGAGGAACTGGAGGACATGCTGGAGAGCGGGAACCCCTCCATTTTTACCTCGGATatCATCTTGGACTCGCAGATCACCCAGCAGGTGCTGAACGAGATCGAGTCACGGCACAAAGACATCATACGGCTCGAGTCCAGCATCAAAGAGCTCCACGGCATGTTTGTGGACATGGCTATGCTCGTAGAGACGCAGGGTGAGATGATCGACAACATAGAGAACAACGTGAGGAACGCAGTGGAGTACGTAGGCAAAGCTAATGAGGAGGTGAAGAAAGCTGTGAGGTACCAGAAGAGCGCCCGCCGgAAATATATCATTCTGGCTGTGATCGTGCTGGTGATAATCGGTGTTCTCGTGCTAATCATCGGCCTTTCCGTGGGCCTGTCATCTAAATCGTCTATAACCGCCGCATCGTCCATTACTACATCAACCAATCCTGCTTAAGCATGCTTCCTCTACTAACACACTGACTGATCCGAAAAATTGTGTATGTTGCCATTTGCGGATCGGTGTGCCTTCTCCTACTGCTCATCATTATCGTCGGAGTGTTTGCTGGTTAGCCACCAAGACTCCAACCAAAGAAGTCCAGAACCTTCAGCGCTAAACTAAAAGCTTTGTATTTAGCCGTTTTGCTACTACTACGATTTTTCTAATCTTATGGCTCGTGTTTATAGAGTTTCAAATGCTGAAGAAGAAAGATTCCTCATTTCTCCAGGAGCTgagatttaatattttgttaacaAACTGTGACGTTTTGTTATAGACATTCATGGCCAggttttttcttcctcttcctatAAAGGGATGAAAATATAAAGCTTTTCATAACCTCCGGATTCCTAAAAGGGCTACATTTACGTTTCCTTGTCATCACCGTACACCATTGTTCATCTAATGTGATGCTCATTATGGATTTAGAACAACATTTtggccaaaaaataaaatgaacacagtaTCCACAAAGGTagtcgatcagccaagacatatTTGGTGGCCAAAGTTTGCTACGAGCTAATgaagcttatagctaccagttccATATGAGCATCAGACAAAGGCCAACGTTTGAAGGTGTAATTATATAGTTTAGTAGATGAAAATATACTTCCAGGTGTGTTAGTatggtgttgggccaccacaagccaccagaacagcttcagtgctccTTGGTATCGATTCTTCAAGTCTCTGGATCTGTACAGGAGCGATGAACACCAGTTCTTCCAGAAGATCTTCCCTCAGTCTGTGTTTCGATGAGCATGGTGGAGAGTTCTGTTGCTTTCTAACACgtcgctccaaaatctccctTAGATCCTCATTGCTTCGAGATCTGATGAGTGTGAAGGCCATGGCAGATGATTTACATCCTCATCAatccattcagtgagcccttatgccctgtggatgtgggtggagtcatcctgggaaagaccacacccatcaggaaagaaatgtgtcattataggataaatgtgatcagtcagaagaactgcAGAGGTGATTTGCTTCCCCCTAAGTGAACaagtggagccaaaccatggcaacaaaaataaataaatgcccccagACAGCATAAGAGTCAAAAAGTCCTTTAATTCGTCACACATATTGTTACGATTGAACTGGTCAACTGATTTGGCCCTCTAATATTTTGCACAGCTGGTGATGGACGTTTGTCCGTATCGTTCcagtttctctggaaactttgtgtaatTTGCCTTAAATTTTGTGCAGTTGCTAAACTCCCTTATTTGCTAACTTCATTATCAATTTAGCTCCACAAATATAAATAACGAAGGAAATTTCAGACACTTAAACTTGTCTTGGGTGATTCGCGGCAAGAACGTATTTAGCCAGAACtatcagtttaatatttttggtCTTTTGATACTACTTTATCTTcctaaaagaaaagaaacttaAGATACTTCTCTCCTATAATAATTCTCTTTATAAACTCTGTTTATGGAAATGATTAATATTGGCTGAAATTGCCAGTTTCTTCATCCTTCATGAAGTGAAACTCTGGATTGGTTTGTGAAGCCTTCACTATTGTGATTTGTTGCAAAGTCTTGATCTCGGGTCTGGTTTACATTTGCATCACACTCATGAAGCTGAACCATAATTTACTGTTTTTTGCATCTTCTATACTCTACATCCGTTTCATGAGCTCTGAACTCTGGACTCTCAATAAGCGTTCAcgtgtttacattttattcactgtttaaCATGGCCTTGTTTATAACTTATTGATTGATTGCTGATCGATGCCTTTTGCCCTTCATATATGATGTAGTCAATAATAgatgtgcatttttgtcatcACTGGTTGTCTTTACGTCATATTCAAACTTTATACGCTAATATTTCTGCCTGAGAGTTGCACAGTTGAGTAGTGTTCTTTGCTCCGCAGCACTATGATGTGTAACGTCGCTCGCTGCCTTGTGAGGTCTGACCGAAGACCGCAGACGCTGATGCAATCCCAAGAAGTGCACTTAATATTGtaacacagaatacacacatcAAGTGCACTTATTATTCAGCCAAATGTTAAAAAGCCagtgatggggaaaaaagactGCTTCGTCACGTCAGTGCCCTTAATGATGAGATAAGTGATGTAATGGTGCACAGATTCACAGCTCACTTTAAACGCTGCCATGTTGTATGTGATTTTCCTTTATAATCTGGTGTACACCTCAGATCAGGatggaaaatagaaaaaagaaaagatggcagtgtttttttttatgtaatgtcACTGACTGCTGGGTGTTTCAGGGATGGAAGGCTGATATCAGACCTTTGAACATGTTTGTTTGTGAGAATTTGTTGGATATACTGAATGCTCCTATAGCTATGTATGTAAAAGTCAATTTCTGTGATTAAAATGGAATTGTGCAA

Function

GO: NA

KEGG:

id description
K08486 STX1B_2_3; syntaxin 1B/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164826 lncRNA upstream 85039 26512892 ~ 26519482 (+) True G139551
TU164785 lncRNA upstream 180827 26400191 ~ 26423694 (+) True car15
TU164434 lncRNA upstream 568388 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 654072 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 789480 25810175 ~ 25815041 (+) True G139172
TU164945 lncRNA downstream 258934 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA downstream 271375 26891077 ~ 26894530 (+) True G139653
TU164991 lncRNA downstream 487227 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 487227 27106929 ~ 27108878 (+) False G139686
TU165045 lncRNA downstream 563319 27183021 ~ 27261741 (+) False fam160b2
XM_026945698.2 mRNA upstream 2281 26592058 ~ 26602240 (+) True piwil1
XM_026945700.2 mRNA upstream 2281 26592191 ~ 26602240 (+) False piwil1
XM_034306351.1 mRNA upstream 36589 26562820 ~ 26567932 (+) True LOC117597788
XM_026945921.2 mRNA upstream 56513 26544657 ~ 26548008 (+) True fzd10
XM_026945832.2 mRNA upstream 129030 26468319 ~ 26475491 (+) True hpdb
XM_026945873.2 mRNA downstream 6351 26626053 ~ 26729946 (+) True rimbp2
XM_034306963.1 mRNA downstream 6351 26626053 ~ 26729946 (+) False rimbp2
XM_026945876.2 mRNA downstream 6351 26626053 ~ 26729946 (+) False rimbp2
XM_034306960.1 mRNA downstream 6351 26626053 ~ 26729946 (+) False rimbp2
XM_034306965.1 mRNA downstream 6351 26626053 ~ 26729946 (+) False rimbp2
TU164841 other upstream 37758 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 127062 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 127644 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 128171 26476278 ~ 26476350 (+) True trnaa-agc
TU164784 other upstream 147245 26454622 ~ 26457276 (+) False car15
XR_003404685.2 other downstream 6351 26626053 ~ 26729831 (+) False rimbp2
TU165116 other downstream 809025 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 1399769 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2868271 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2868847 29488549 ~ 29488621 (+) True trnar-ucg_2

Expression Profile