RNA id: XM_026945916.2


Basic Information

Item Value
RNA id XM_026945916.2
length 3741
RNA type mRNA
GC content 0.46
exon number 6
gene id lzts1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29788461 ~ 29799944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTTACTGCTTCAGccaagaacacacactcacacacacacactctcgcacactctcacatactctcacacacacacactcacacacgctctcacacactcacacacactcacacacacacactttctcatacACACTTTCTCATAGACTCTCATACACACGATCTCTcttatacacgcacacacacacactctgacgcTGATGAACAGCGTgcgtgcgcacgtgtgtgtgtgtgtgtgtgtgtgtgtagggggacACGCTGCAGGGACGAGTGTGTTTGCAGGACGATTCTCCTCTCATAGTTTTTCCTCAGAACTGATGAGGACATGAACGTGTCCAGATCCATCGAATCTGTCGAACTGTCCTGTGAGCTCCTGCTGTTTCCATAGAAACGCTGTAAGAGTTTTCATCACATAGCTAACACGCTAGGCTAGTTAGGAGAAGTGGAAATTTGGGGAAATAGCAGCTCGATAGACCgataaataaaaagctatagATGATTtactgatgttttatttaattatttaaacacttATTAGCTAAGACACTGAGCTAGCATGCTAAGTAAGCGTGTTTATTACTGAACTAGCAGCCAAACGGAATAAGTAAACGTAGCAAACACAACgtggcaaaaatatcaaatataatcTGAATATTACTGCAAACATACAGTGTGACCTtcatgttagcattagcatacaAGCATTAAGGAAGAAATTAGCAGTAAATAAGTAGAAGATGGAGTCCATATAAAtagtttaaaagtaaaagtagacGCTCTGTGTCTCTCAGACTGTAATGTGATTGTGATGTACGATGTATTGCACGCGTGTGCAGGGCATCATGGGTAGCGTCAGCAGTCTAATACCCGGCACTAAAAACTGCAGAGGTTCGGATCACAAGCTGAAAAAAGGATTTCAGTGTAAAAGAGGCGGCCTGCTGAAACACGGCTTCTCTCACGATCACAAcgccaaaaacaacaacaactccaAACTCGACCACGGCTCTGCCGGAACCGGCAACAGCGACGACTTCTTCTACATCAAAGTGAGCCACAAACCGAGAGGAGACGAAACGCCGGACGACGCGGGCTCGAGGAAAACGCCGACGGAACTGAGCGCGAGATTAGAGCAGAGTGCAGAAAATTCCTTCACGCCGCAGTTCCCTCGGAGCAGCAGCTCTTCCGTGGAAACCCACAACAGTTTGAGCACCATTCTGGGAACTAACCTCAGCCATATCGATCGTCCCAAAAACCAGACCCCAGAACCGAAACATGACATGAGCTCGGGATCTCCGTGTGATTCCGGGATTTCCGGCTCGAGCTGGACCAACGACGGCGCTAACAGCAGGACTAAATGGACTGGTGGAGTTAATGGAGATGGCGGGACGTCAAACTCCAGCACGAGATCCACGAGCGTGCTGAGCGACTGTATATCCGGTCCCGCTAGCGTAAAGACAGATACAGCGGCTAAAAATGCGGAAACAAACCAAACGAGCCCTTTTACAGATCGGAATTTTCCAAGTTCCATGGAGTCTGAAGTGTCCGAGGAAAGACAGCTCTACAGCTCTGAGGTATCCCAGCATGCTTTGCGGGCTCAGCAGCTCCTCCAGTTGCAGGTTCTTCAGCTCCAGCAGGATAAAGATCAGCTCCAGGAGGAAGTGGATCAGCTGATCAAGGACAGAGACGCAACCGAGAGTCAACTCATCTACAAACACCAGCACACACCGTTAACACCCACCCTGGAGGAGACGCAGTGGGAGGTGTGTCAGAAAGTGGGCGAGATCTCTCTGTTgaagcagcagctgaaggacTCGCAGGCTGACGTGACCAGTAAGCTGAGCGAGATCGTCTCTCTGAGAGCCGCACTGAGAGAAACCAGGAGTAAgatggaggagctggaggagaaaCACCGGGAGTGTGAGGAGACGCTGCGCTTACGGAGCACTgagatggagGTCTGTGAGAACGAGCTGCAGAGGAAGAAGAACGAGGCCGAGCTGCTCCGAGAGAAAGCAGGAAAGCTGGAGACGGACGTCAAAATGCTGAAGCAAGACCTTCTGGTGGCCAAAGAGGAACATGTAGAGCTCCTGAGCCTGAAGGTCCAGCTGCAGGAGCAACAACATCTACTGCAGATCTGCCAATCCAAGATGGCCGACCAGGAAACTTCAGGACAAGTCGACGTCCTTCAGAAGGAGGTGGAGACACTGCGTGAGCAGCTGGAGGACGAGAAacagaagaaggagaagatcCTGGGCAGCTTCCATCGCGAGAAGCAGACATGGAACAAAGAGAAGGACAAAGTGATACGCTACCAGAAGCAGCTGCAGTTTAACTATGTGCAGATGCACAGAAAGAACCAGGAGCTGGAGAAAAAACTGAAGGAACGAAACAGCAAAGTGGATAACAGGACAGAAAAGGACACGGACGTCCACAAGACAGAAGCGCACTACGATGAAATGATGGCCACTGAGATATGAAGCAGTGCGCTGTTCCAATCCGCACTTGGTCGAGTCCCATCGGCCATCTTAAGGGCTGTTCAGTTACTGACATCAgtgtacactcttaaaaaaaaaaaggttcctcaagaGTTCTTCAgatggttcttgtttttttaaccttagCTAAAGAACCCTCTTTGAATTGGAAGCCATTGTTTGTAGAGTTATATTCAGAGCCTTCCCTCAGacagacaaaccaaagaaccctttgcTAGATAAAGTGAACacttcccagaatgcactgctaCATTCCTGATGTCAAAATGGCAGACGAGGCATAAACAGCGTCAGGTTTAAATGTTTCAAATCTGTATCGTTCAAATTATTGTGTCCCTCATGGATATTAGCCAACCTTACTCTGCTAGCTATTTAGCACTTCAGCTTAGCAAAGGAGCTGCGATTTAGTCAGAAATTCCATCAAAGTCACTTCCGCCAAGTTGTACGTCTATTCCTAGCTCCGCTCCCGCCTACTTGCGCTAGAATGTGACGATTGCAACATGGACCTAACATGTAGCGCCCTCTAGTGACATCGTCAGTGTCATTGAAGATTAAAAGTTAGTCtaaattttatgaatttttttctgattggaATTTATTTACGAGTGAAGCTGGTCGctgcagcagtttttttttattgttttattagctAAATAAACTCTCACTGCAGTCAGTGCTGAAAACACAACAGGCAAGTGCTGTGATTATTACATCACAACatataacagccaatcaggttccagtatgcaaatacaGACCATGTAGCAGCGACAGTGGAGGGTCGAGGGACGTTTCCAGTTTCCGTAAAAGTGTAGTAGCTTCCGTGGAAACTCCAGATCAAACAgaatattattcaatatatatataaaagatgaGTTTTGTGCTCAGTCTCTGACTTTCTGACTTTAAAATGAGGTActgagaggaaataaaaatctacCAAAGCAAATCACACTTTAAACAAACTTAAATAAGCTTTATTTCAACCAAGACCCTGAACATTTACGATTTCCTCCAAAAATAATGAATCTTTTCTCTGTATTTAAAGCATATGAGCTTTATTTCAGCCAAACATCTACACAAACACTAAAACTCTAAACTCGCTAAACTCGCTAAAGCCACTGACTCGTCGAGGGCACGctcactacacacacgcacacacacacacacacacactgaatgatGTACAGAATGTATTGTATATTGCTTATTTATtctgataatataataaatggTACTGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 283589 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 367167 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 436705 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 490664 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 542145 29239482 ~ 29246316 (+) True G140884
TU166938 lncRNA downstream 119788 29919732 ~ 29937740 (+) True G141242
TU166944 lncRNA downstream 137564 29937508 ~ 29954068 (+) False G141247
TU166928 lncRNA downstream 149914 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 151821 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 164823 29964767 ~ 30022919 (+) True G141236
XM_034306928.1 mRNA upstream 92430 29624140 ~ 29696031 (+) True gfra2a
XM_026945772.2 mRNA upstream 287789 29491293 ~ 29500672 (+) True dok2
XM_026945773.2 mRNA upstream 302502 29482016 ~ 29485959 (+) True kazald3
XM_034306470.1 mRNA upstream 315539 29411827 ~ 29472922 (+) False si:ch73-138n13.1
XM_034306270.1 mRNA downstream 20559 29820503 ~ 29844470 (+) True msi1b
XM_026945697.2 mRNA downstream 60244 29860188 ~ 29876280 (+) True LOC113546008
XM_034306781.1 mRNA downstream 78415 29878359 ~ 29887355 (+) False prkab1b
XM_034306783.1 mRNA downstream 78432 29878376 ~ 29887355 (+) True prkab1b
XM_034306784.1 mRNA downstream 78553 29878497 ~ 29887355 (+) False prkab1b
trnar-ucg_4 other upstream 298274 29490115 ~ 29490187 (+) True trnar-ucg_4
trnag-ccc_2 other upstream 298871 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_3 other upstream 299047 29489342 ~ 29489414 (+) True trnar-ucg_3
trnar-ucg_2 other upstream 299840 29488549 ~ 29488621 (+) True trnar-ucg_2
trnag-ccc_1 other upstream 300418 29487973 ~ 29488043 (+) True trnag-ccc_1
TU166912 other downstream 60317 29860261 ~ 29876266 (+) False LOC113546008
TU166919 other downstream 103584 29903528 ~ 29924206 (+) False LOC113546064
TU166932 other downstream 108471 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other downstream 108471 29908415 ~ 29926735 (+) False LOC113546064
TU166924 other downstream 110085 29910029 ~ 29929154 (+) True G141234

Expression Profile