RNA id: XM_026945919.2


Basic Information

Item Value
RNA id XM_026945919.2
length 2453
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113546156
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28103189 ~ 28110098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGTTCACTCTAGAGCTTTCTGACTGATCCGGTCTCTCATTTCCCCCGgagaaggacaaaaaaaaaatctggcaggTAGCCAGGAGTTATTTAGGAGCGTGTCATATTCAGTCAGTaccgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaggtgtagTGGGCTGAGCAGGAAGCGCAGAGCAATTAAAATCGCGCGTGTCCAAGAGACTGAgtctcgagagagagagagagagagagagagaaagagagagagaaagggtaaTCGAGTCGAATTTGTTTTGGGGCGTCGAAAAAAAAACCACGCACACACTGTTATAAATAGTGGTGTGTGAGGAGAGGATGTGAGCCTTGGTGAGCCTTGGTGAGCTGGATATCTACCCACCGAGCATGGAAGTGAAAGAAGAGCGCGCGGACGGTCGCGAGGTGCGCGAGGCTTACACGATACTTGTGGAATCGGACGCGATCGTGCGCAACAAGCGCGCGCTCCGGCGCGAGATGTGCATCAGCCGCATCGTCATTTTCATCCTCCTGATCACCTGCGTGGCCTTCTGTGTCATCCTGTACATCCAACAGGACCATGCAAGCAAGAATACCAAAAACAAGGAAAAGGCAAATGaAACATGTGCCACATTCCAACCCGGCAACGCAGAAGCTCACAAAGTAGATGATCAGACACCTCCCATGGCTTCCCTGAGCATTCACCCTAATTCAATGAACCCCATCCTGACATGGCAGGCTCATCATAAGCACATGAACGACTTCTGCTTGGAAGGCCCCTGCGAGTCTCTGGTCATACCTCAAGATGGCAAGTACAGACTCGGCCTGCAGATAACATACGGGGAAGAGAACCCCAAGGAAGAGCAGAGCCATCTGGCTCACAACATTGTCATGTACTCTGACAGTTACAACGATCCGATGACCATTCTGTCCGTCTATGAGACCGTTTACAAGAAGAGCACCTGGTTGAAATCCGTATACTCTGAGGTCATCCATGTTTTCAGTAAGGGGGACAGAGTCAAGGTGCAGAGCGATAACGCCAAACTCATCGACAGAAGTGGACAACCGTGGACGAAAAACTTTCTCACTTTCCAATTTGTTTCCAAACTGAGGGATCTATGAGCTCTTTAGCAGAGCAAGGACATCTAACACACCATCCATATACACTAAACTAATCAAAGCTAACTAACAAAGCTAACATTGCAGAGTGTGATTGGATGAGTGTAATAcaactgtactgtatttttctttaccTTTTTCTGTTCTCGGCCAATAGCAGGTGCTGTTATTATTAGTGAAGCATATTGTAATGATTTTATAATATTGTCTCATGCCTAATTTTGGTTTTTATGGTAGGCGTGATGCTCCAGAAGATACACTGAAGGTACACTACCATTAACTTGCGCTAACATATTATAACCCTACTGGTATGCTAGCATAAATTTAGCATGCTCATAGCGGCGGTGATTGTACCaaaaaacagctgtttataaAGTGAATTACAAGCGTTCAGCATTAACTATTGCTCTGTAATTAACTACAGCAACACTAAGATTAcaaaaactaaaccaaacaTGGTGCTAAAGTGAACAAGTGCCATTTGAGATCCAGGACatattaagggaaaaaaaagtcctgGTACGTTAATCGGACTTTCACAACAAAGCTACCTGTGTGAGAAACCGCTAAATGGGACGGCCTGGAAAAGGCGCTAACACAGGAAGCGGTGTACGGTGAAAACCCGGACCTGCAGCCTGTTGCACCAGCTGAACACAAGTTCGCTCAGAGTGAAAAGTCGATCCTAATCATCTGTAGGTTGAGGGGAGCTAAAAATTAGCGCAGTCAAGAATTTTTTGCGTAAAGTTATCATATAATTTATGCCACCATGTATTTCactagacagctagctagctgttaaATGCTAGTTTAGTTGCTAGCTGTGGAATTCAAACATTTTCAGCATTGACACACTTAGTAGCTaactttctctttcagaaatCAGAATGCTGTATGGAAAACTCTTAACCTTCCTGCTGATATTTCCTCACCGAaaaacagaaacttttttttgtagtatttcaatttcaaaatgatatttattttaaccatagataaatgaacaaaatcagTATTTATCCATCTGTTTTCTAtcgtatttgtattttttaatgttgtatcTTGGTTTTACTCTGCACAcatttacgttttttttttttttggtacttttGGTTACCAATTTTCAGTACCCCACCTCTAGGTGTATGTATGTTTGAAGTTATAATGTAAGGCTAGGTTGTATCTATGCCACTTGGTGCAAGCGTTGATCTTTTAGTAGTTCGTAAACTCGACCGGAGCGGACATGTACATTACAAGCTAGGCTACGTTCAGCTGGTTTAACAGGCTGCAGCAATCCATATCTACATATATACATGCAGTATATATAC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165678 lncRNA upstream 81793 28019243 ~ 28021396 (+) False arpc5la
TU165680 lncRNA upstream 161102 27930723 ~ 27942087 (+) True G140244
TU165672 lncRNA upstream 167371 27931210 ~ 27935818 (+) True G140240
TU165687 lncRNA upstream 243488 27843894 ~ 27859701 (+) False dbnlb
TU165668 lncRNA upstream 251857 27774737 ~ 27851332 (+) True G140237
TU165760 lncRNA downstream 14508 28124606 ~ 28124811 (+) True G140307
TU165764 lncRNA downstream 26513 28136611 ~ 28136832 (+) True G140311
TU165771 lncRNA downstream 45610 28155708 ~ 28155911 (+) True G140318
TU165781 lncRNA downstream 61490 28171588 ~ 28171793 (+) True G140328
TU166087 lncRNA downstream 309022 28419120 ~ 28434435 (+) True G140574
XM_026945918.2 mRNA upstream 12396 28054188 ~ 28090793 (+) True si:ch211-158d24.2
XM_026945903.2 mRNA upstream 75739 28019184 ~ 28027450 (+) True arpc5la
XM_034306841.1 mRNA upstream 87901 28005083 ~ 28015288 (+) True LOC117597849
XM_034306842.1 mRNA upstream 87901 28005083 ~ 28015288 (+) False LOC117597849
XM_026945902.2 mRNA upstream 120106 27954282 ~ 27983083 (+) True olfml2a
XM_034306290.1 mRNA downstream 86758 28196856 ~ 28413159 (+) True si:dkeyp-14d3.1
XM_034306292.1 mRNA downstream 193257 28303355 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034306294.1 mRNA downstream 215383 28325481 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034306291.1 mRNA downstream 215522 28325620 ~ 28413159 (+) False si:dkeyp-14d3.1
XM_034306295.1 mRNA downstream 223949 28334047 ~ 28413159 (+) False si:dkeyp-14d3.1
XR_004578633.1 other upstream 75739 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 673712 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1373358 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1536426 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1625730 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 1377875 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1378451 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1379244 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1379422 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 1380017 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile