Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034306270.1 |
| length | 1371 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 15 |
| gene id | msi1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 29820503 ~ 29844470 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007417 | central nervous system development | biological_process |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K14411 | MSI; RNA-binding protein Musashi |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU166562 | lncRNA | upstream | 315631 | 29503683 ~ 29504872 (+) | True | G140943 |
| TU166544 | lncRNA | upstream | 399209 | 29420880 ~ 29421294 (+) | True | G140935 |
| TU166505 | lncRNA | upstream | 468747 | 29332414 ~ 29351756 (+) | False | LOC117597881 |
| TU166491 | lncRNA | upstream | 522706 | 29297050 ~ 29297797 (+) | True | G140910 |
| TU166461 | lncRNA | upstream | 574187 | 29239482 ~ 29246316 (+) | True | G140884 |
| TU166938 | lncRNA | downstream | 75262 | 29919732 ~ 29937740 (+) | True | G141242 |
| TU166944 | lncRNA | downstream | 93038 | 29937508 ~ 29954068 (+) | False | G141247 |
| TU166928 | lncRNA | downstream | 105388 | 29949858 ~ 29968041 (+) | True | G141235 |
| TU166943 | lncRNA | downstream | 107295 | 29951765 ~ 29954068 (+) | True | G141247 |
| TU166930 | lncRNA | downstream | 120297 | 29964767 ~ 30022919 (+) | True | G141236 |
| XM_026945916.2 | mRNA | upstream | 20559 | 29788461 ~ 29799944 (+) | True | lzts1 |
| XM_026945917.2 | mRNA | upstream | 20559 | 29788461 ~ 29799944 (+) | False | lzts1 |
| XM_034306928.1 | mRNA | upstream | 124472 | 29624140 ~ 29696031 (+) | True | gfra2a |
| XM_026945772.2 | mRNA | upstream | 319831 | 29491293 ~ 29500672 (+) | True | dok2 |
| XM_026945773.2 | mRNA | upstream | 334544 | 29482016 ~ 29485959 (+) | True | kazald3 |
| XM_026945697.2 | mRNA | downstream | 15718 | 29860188 ~ 29876280 (+) | True | LOC113546008 |
| XM_034306781.1 | mRNA | downstream | 33889 | 29878359 ~ 29887355 (+) | False | prkab1b |
| XM_034306783.1 | mRNA | downstream | 33906 | 29878376 ~ 29887355 (+) | True | prkab1b |
| XM_034306784.1 | mRNA | downstream | 34027 | 29878497 ~ 29887355 (+) | False | prkab1b |
| XM_026945800.2 | mRNA | downstream | 54987 | 29899457 ~ 29903243 (+) | True | LOC113546087 |
| trnar-ucg_4 | other | upstream | 330316 | 29490115 ~ 29490187 (+) | True | trnar-ucg_4 |
| trnag-ccc_2 | other | upstream | 330913 | 29489520 ~ 29489590 (+) | True | trnag-ccc_2 |
| trnar-ucg_3 | other | upstream | 331089 | 29489342 ~ 29489414 (+) | True | trnar-ucg_3 |
| trnar-ucg_2 | other | upstream | 331882 | 29488549 ~ 29488621 (+) | True | trnar-ucg_2 |
| trnag-ccc_1 | other | upstream | 332460 | 29487973 ~ 29488043 (+) | True | trnag-ccc_1 |
| TU166912 | other | downstream | 15791 | 29860261 ~ 29876266 (+) | False | LOC113546008 |
| TU166919 | other | downstream | 59058 | 29903528 ~ 29924206 (+) | False | LOC113546064 |
| TU166932 | other | downstream | 63945 | 29908415 ~ 29926735 (+) | False | LOC113546064 |
| TU166933 | other | downstream | 63945 | 29908415 ~ 29926735 (+) | False | LOC113546064 |
| TU166924 | other | downstream | 65559 | 29910029 ~ 29929154 (+) | True | G141234 |
