Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034306275.1 |
| length | 1088 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | prkcz |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 410989 ~ 456088 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0007097 | nuclear migration | biological_process |
| GO:0048699 | generation of neurons | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU147051 | lncRNA | upstream | 8893 | 400915 ~ 402096 (+) | True | G124499 |
| TU147026 | lncRNA | upstream | 69231 | 341438 ~ 341758 (+) | True | G124481 |
| TU146989 | lncRNA | upstream | 180121 | 207271 ~ 230868 (+) | True | G124453 |
| XR_004578543.1 | lncRNA | upstream | 201576 | 208161 ~ 209413 (+) | True | LOC117597786 |
| TU146983 | lncRNA | upstream | 210046 | 197931 ~ 200943 (+) | True | G124451 |
| TU147071 | lncRNA | downstream | 5424 | 461512 ~ 466459 (+) | True | G124511 |
| TU147072 | lncRNA | downstream | 7491 | 463579 ~ 464969 (+) | True | G124512 |
| TU147080 | lncRNA | downstream | 33779 | 489867 ~ 490074 (+) | True | G124517 |
| TU147082 | lncRNA | downstream | 38804 | 494892 ~ 517899 (+) | True | G124519 |
| TU147083 | lncRNA | downstream | 47360 | 503448 ~ 503792 (+) | True | G124520 |
| XM_034306641.1 | mRNA | upstream | 44208 | 342662 ~ 366781 (+) | True | tnni3k |
| XM_034306643.1 | mRNA | upstream | 44208 | 342662 ~ 366781 (+) | False | tnni3k |
| XM_034306642.1 | mRNA | upstream | 44208 | 342662 ~ 366781 (+) | False | tnni3k |
| XM_034306644.1 | mRNA | upstream | 69903 | 334903 ~ 341086 (+) | True | fpgt |
| XM_034306571.1 | mRNA | upstream | 146730 | 261399 ~ 264259 (+) | True | LOC117597814 |
| XM_034306306.1 | mRNA | downstream | 11673 | 467761 ~ 478047 (+) | True | LOC113541233 |
| XM_026938098.2 | mRNA | downstream | 16452 | 472540 ~ 476546 (+) | False | LOC113541233 |
| XM_026938255.2 | mRNA | downstream | 34357 | 490445 ~ 494112 (+) | True | tnfsf10 |
| XM_034306924.1 | mRNA | downstream | 50976 | 507064 ~ 508910 (+) | True | si:ch73-70k4.1 |
| XM_026912303.2 | mRNA | downstream | 59222 | 515310 ~ 534999 (+) | True | LOC113525715 |
| TU147050 | other | upstream | 3555 | 399756 ~ 407434 (+) | True | G124498 |
| TU147002 | other | upstream | 80590 | 272417 ~ 330399 (+) | True | G124462 |
| TU146973 | other | upstream | 232572 | 177662 ~ 178417 (+) | True | G124442 |
| TU146916 | other | upstream | 324906 | 70073 ~ 86083 (+) | True | G124403 |
| TU146909 | other | upstream | 359917 | 48978 ~ 51072 (+) | True | G124399 |
| TU147085 | other | downstream | 51007 | 507095 ~ 508908 (+) | False | si:ch73-70k4.1 |
| TU147120 | other | downstream | 189878 | 645966 ~ 647953 (+) | True | G124541 |
| TU147121 | other | downstream | 189878 | 645966 ~ 647492 (+) | False | G124541 |
| TU147123 | other | downstream | 189878 | 645966 ~ 647492 (+) | False | G124541 |
| TU147149 | other | downstream | 248501 | 704589 ~ 705857 (+) | True | G124565 |
