RNA id: XM_034306294.1


Basic Information

Item Value
RNA id XM_034306294.1
length 2844
RNA type mRNA
GC content 0.53
exon number 8
gene id si:dkeyp-14d3.1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28196856 ~ 28413159 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGACTTCCGGGTTACATCTAGGTTTATAGACCGGTCATGGGCGTTCATTcgttttgtgtattgtGGTGAAGCTCAAAGACGGCGTGACATTCTTGGGGGCGCGACCCTGCAACCCCATGCTGTGGATGATCAGTCAGGACGCCAGGGTCGAAGGTCACCGGGTCGTCACCCTGCACTGTCGGAAGAAAGAGTCTAGCTACGCTCAGAGggtggaGCCCGGGTGGCAGCGGGTGGTGCAGGTGGATCTGGAGATGGATGTGATGGTGGACTCAGTGGGCAGTGGGCTGATCTCGTGGATGGTGGAGTATCCGGGCATCAGAGCGACATCCGACGAAACCGAGACAAAAATCCACATCGTCCAGAGAGAGCTGTCCGGCATCGTCCCTCTCGCCATGGACACCGAGATCCTGAACACGGCCGTGTTGAACGGCAGAACGGTGGCGGTGCCGGTGAAGGTGGTGACGGTGGCGGTGGACGGAACGATTACTGACGTCTCGGACACGGTGCAGTGCCGATCCACCGACGAGGACGTGGTCAAGgtgtCAGACAGGTGCGACTACGTGTATGTAAACGGTAAGGAGATGAAGGGCCGAGTGCGGATGCTGGTGAACTTCACCTACAGCTTCGCTACGGCTCAGCTGGAGATAAACGTGTGGATCCCCCGCCTGCCGCTCCACATCGAGGTGTCGGACACAGAGCTGAGCCCCATAAAAGGCTGGAGGATCCCCACAACGCCCAACACGCCAAGGTCGATGCGGGACAgcgatgatgaggatgatgaggagcgGAGAGGAAGGACCTGCACGCTGCAGTATCAGAGAGCCATCATACGCATTCTCACTCACTTCGTCGCCGAATCAGCCGAGGTCCGAAATCAGCTGACCTACATGCTGGGCTCTGATTGGCAGATGGACATCACAGGGCTGGTGTGGGACTTCCTGAAAGTGGAGGATCCTCGAATCGCACGCTTACAAGATGGCCGCCTACTGGAGGGAGTGGGCACGGGCATGACCAGCATCCAGgtcctctctcctctctcagacTCGATCCTGGCGGAGAAGTCGGTGTCTGTTGTAGACGAGAGAGTCAGCATCACTGAACTGGGCCTGCAGTTGGTCAGCGGCCTCACGCTCCGCCTACAGCTCAGCACAGGAAGTAACCAAGCCATCAGCGCCACGGCAACCACACAGGAAGTGCTCAACACGCCCAaacagGAGGCGCTGATCAGTGCTTGGCTGCAGTTCAGTGACGGCTCCATGGCCCCTCTGGACCTTTACGACCCGGATCACTTTGTGCTGATGGTCATCTCTCTGGACGAGGAGGTGGTGAGTGTGAATCAGGACGCAACCGGGCGCTGGCCCATAGTCTCAGCTCAGGCTGAGGGTCAGGGCCCACTGCTGCGCGTCGAGATGAGCGTCCATGAGTCATGTCAGAAACTCAAACCTCGCCGCAGCGTGCTTGCCGCCGGAAACTGCCACGTCCGGGTGAAATATGGCCGCACGGAGAGCGTCTCACAACCTGAGTACGGAGATGACACTGACAACCACCGGCAGAACCTGAATTTACCGGACCGAACCGGAATGGAGGGCCATTACTTCTACAGCTCCATTTCCAACATGGACGACGATGGAGTGATGAGGAGAATCACCACCACAACCAAAACAGCAATCATCCGAAGAACTGGGGGAGAGAAACTGTCAAATGACGGCAGCCAAATTTCCAACGTTCCTATCGATTTCTCAGATTTCCCGGCCCAAGTGGACCTTCCCCGGGGACACAGTGTCTATGATGATGACTTGATCCAGAGCAATCGAGGACTCTCAGACCTGGAAATAGGGATGTATGCCTTGTTAGGAGTCTTCTGTCTGGCTATACTGGTGTTTCTTATTAACTGCATTTCCTACGCACTGAAATATCGCCATAAGGAGATGAGCATTGAGGGTCAGGAGAGTCTGAACCACGCACATGACTGGGTGTGGCTGGGAAACGAGGCAGAGCTTCTGGAGAGTCATGTGAGTCTGACACCACAAACAGACGAGCAAATCACAATTATGGACTCCAGCATCGGCGGGCTGGAGGAAGGAAGCCTTCTGCTCAACGGCGGTTCTTTACAGAAGAACAGTCATGAGCGGCAGGAGCATCGAGGAGCCGAGAACAACGGCGGGAAAGACGGCAAAGGAGATTCGCCAACCACCAAGAGGAAGAGAGTAAAATTCACCACGTTCACCACTATTCCAGCCAGTGAGACTCTCGGAGAGGAGCCGAACGAGGAAATAAAGTGGGTGTGTCAGGATGTGGACATGGGAGAGTCCAAAGAGCTGCAGAACTACATGGAGCGGCTAAACGACAGTGTTTTAAAAGAAGTGGCGTAGTCGGCAAAGTGACGGCGTGTGTTAAACTGCAGAACTCACCCTTATGCCTTCTTCATAGAGCCAGGATTCAGTCACGGAAACATCACAAGCTCTCTGAGATACAGAAAAACCATGGGATATAACATTTGTGCATTTGACATACTCTCAGATCAACACGGCAGCTGCCAAAAGACTTGCTACTTGACGTCATGGTACTCATGGCAAAAGAGTTTTTAAATcaatgaacacaaaaaaatccGACTTTCatttattgttcatttattgCCCTTCACTTTATTCCTTATCCTCTTcatttataaacaaatttattttagcGCCTtttctagttaaaaaaaaaagaaatgacagcATTTCCAAGCTTGCAgatgctccacacacacacacacacacacacacacacacaccaatgagtgtaatattaatgcatattgtatcactgtaaataaagtgcACATAGAATTGTTTTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165781 lncRNA upstream 153688 28171588 ~ 28171793 (+) True G140328
TU165771 lncRNA upstream 169570 28155708 ~ 28155911 (+) True G140318
TU165764 lncRNA upstream 188649 28136611 ~ 28136832 (+) True G140311
TU165760 lncRNA upstream 200670 28124606 ~ 28124811 (+) True G140307
TU165678 lncRNA upstream 304085 28019243 ~ 28021396 (+) False arpc5la
TU166087 lncRNA downstream 5961 28419120 ~ 28434435 (+) True G140574
TU166269 lncRNA downstream 102411 28515570 ~ 28516680 (+) True G140748
TU166279 lncRNA downstream 164386 28577545 ~ 28744414 (+) True G140754
TU166283 lncRNA downstream 164386 28577545 ~ 28594444 (+) False G140754
TU166285 lncRNA downstream 164386 28577545 ~ 28742897 (+) False G140754
XM_026945919.2 mRNA upstream 215383 28103189 ~ 28110098 (+) True LOC113546156
XM_026945918.2 mRNA upstream 234688 28054188 ~ 28090793 (+) True si:ch211-158d24.2
XM_026945903.2 mRNA upstream 298031 28019184 ~ 28027450 (+) True arpc5la
XM_034306841.1 mRNA upstream 310193 28005083 ~ 28015288 (+) True LOC117597849
XM_026945691.2 mRNA downstream 55260 28468419 ~ 28495033 (+) True glt1d1
XM_026945841.2 mRNA downstream 375249 28788408 ~ 28803174 (+) True slc7a4
XM_034307003.1 mRNA downstream 740387 29153546 ~ 29164988 (+) True sf3a1
XM_026945780.2 mRNA downstream 754321 29167480 ~ 29178413 (+) True pold2
XM_034307006.1 mRNA downstream 754459 29167618 ~ 29178413 (+) False pold2
XR_004578633.1 other upstream 298031 28019471 ~ 28027450 (+) False arpc5la
TU165116 other upstream 896004 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1595650 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1758718 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1848022 26477387 ~ 26477459 (+) True trnaa-agc_2
trnag-ccc_1 other downstream 1074814 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1075390 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1076183 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1076361 29489520 ~ 29489590 (+) True trnag-ccc_2
trnar-ucg_4 other downstream 1076956 29490115 ~ 29490187 (+) True trnar-ucg_4

Expression Profile