RNA id: XM_034306303.1


Basic Information

Item Value
RNA id XM_034306303.1
length 2785
RNA type mRNA
GC content 0.51
exon number 11
gene id def6a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1726808 ~ 1753281 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACCTGCGCTCGGAGCTGCTCAAGTCCATCTGGTTCGCTTTCACGGCGCTGGACGTGGAGAAGAGCGGCAAAGTGTCCAAGTCCCAACTGAAGgttctGTCTCATAATCTGTGTACGGTGTTGTGTATCCCTCACGACCCGGCCGCTCTGGAGGAACATTtccgtgatgatgatgatggaccAGTCTCTAGTCAGGGCTACATGCCGTACCTCAACAAGTACATACTCGATAAGgtGGAGGAGGGCAAGTTTGTGAAGGAGGACGTGGACGAGCTCTGCTGGACTCTCACAGCCAAGAAGAACTACAGGCCGACGGGGGACAGCATCCTGCCTCAGAAAGACGCCTTCCGGCTCTGGTGtctcttcatcttcctctcGGAGGACAGATATCCGCTAGTGATGATCCCTGAtgagGTGGAGTACCTGCTGAAGAAGCTGTGCATGGCCATGAGTGTGGAGCTGAACTGTGTGGAGCTGGAGGACTTTATTTCCCAGGATTCCATTCAGCAGAACGGTTTCAGTGTATGGGCGTTCCTGGAGATGATGAATTCCGGGAAGCTCACTAAAGGACTTACCAAGGAAACGATCAGCATGGCCATTGAGGAAGTGTATCGAGAGATAGTGGGGGATGTGCTGAAAGAGggcTACCTGTGGAAGAAGGGACAGTTGAGGAGGAACTGGACGGAGCGCTGGTTCACCCTCAAGCCAAGCTCTCTGGACTACTACGTCAGCGAAGACCGCAAAGAGCGCAAAGGCAGCATCACACTGGACACCAACTGCTgcgtagaggtTCTACCAGACAGAGATGGGAAGAGGTGTATGTTCTGCCTGAAGACGATCTCCAAGACGTTCGAGCTCAGCGCCTCAGACACCAAACAGCGTCAGGAGTGGACGACAGCGATCCAGACGGCGATCCGGCTACACGCGGAGGGGAAGTGCTCCCTGCATAAGGAGCTGAAGCTGAAGCGGCGGGAGCAGCGTGACCGCAGGGAGAGGAGGCGGGAGGAGAAGGAGCAGGAGCTGCAGCACCTCCATCTGCTGCAGGAGGAACGCGAGCGCAAGAACGCTGAGCTGGAGCTGCTGAAGGAGGCGCAGAGGCAGGCGCAACTACTGCTAGAACAAGAGGAACAGCGGAGACGCGAGCAGCATGAACAGCTCCAACAAGCACTGGAGCTCCAGCTGAGGGAGGCGCAGGAGgcacgTGTGTTTATGCAGGCTGAGATGGCTctgaaggaggaggaggcggaACGTCAGAGGAGGAGGATCCGAGAGCTGGAGGAGCTGCAGCAGAGATTAGAGGAGGCACTGAGACAGGAGATCAAAGCAAGACAGGACGAGGAGCAGCACCGATCCAAACAagccagGttgctggaggaggaggaggataaGATGAAGGCCCTGATGACTCTGCAGGAGGAGCAAGAGGAGTTCATTCAGAGGGagcagaaggagaaagaggagcTGAAACAGGAGATGGAGAACAAAACGCGAGCGCTGGAGGAGGCGCAGAAACAGCTGGATGAGATCAGAGCTAACAGACACAGAGTGGAGCAGGACGTGGTggctgcTCAGAGGAAGCTCCGGCAGGCGAGCACTAATGTCAAACACTGGAACGTTCAGATGAACAGACTGATGCACCCTATTGGACCCGgagCGGCCATCGACAGGAGGCTACGGCAGTTTCCGCATCCCGCCGCAGAAGGATCCGGCGCTGCGGCTCAGACGGACGAGCAGCGAACAGGATGAGGAGAGCAAAGAGAACGCTGCGGAGAACCGACTCTCAAAGGCCTCCAACGGAACCATGGACACACACTGAGGGGCGTGGCCAACCCAATCCACACCTCGGTTTCAGTTTCCACTGGCAGGGTGCTTGACTAAAGTGACAAACGATTGCAGATATCcatacgagagagagagagagagagagtgcgtgcTACTGAAGCCATAACTTCAGCAGCCTAAATCTCACGAAACCCCACGGACTCTCAGTGACTTACCTCAATACTTAACGCTTTCTTTAAGATGCTTTACAGGATCAAAGCAAAGCATACGGCTACTAATGCAGCTAATCCAGAATTTAACACAGCTCCTGTGTTTACACACTTATTGTGGAAAATATTAACTATACACACAAGTTTTCGTTCCGTATTTTTGCTTGTAGATGTATGCGTGATGTACGTTATGTACACAGATGTGTGATGATTACACTCGGTTTAGCGAGACTTAGCTTTTCTCAGAGGAACTGAGAACTAAAGGCCTCGGCATACTTCATGCGGAGACGACGTTCGGCTAGTTTTCACGAGTGTGGAGCAAACGGACATCATTTCgagatttaaacaaaaaacaaaaagtgcgGAAAAAGTGAGTCTCCTTGTCAATGTATCACTTATTGTATCACTAGAATGCTAAATTCACCATCTTCACCGTCCCTCAGTTTATTTAATGGTCTCTTTTTGTAAATATGGAACAAAATAAGcacctcttcctctccctcatGCTCTTATCATGTGTTTATGTACTCCCATCAGCGAGCAATCATCTTCCTGTAGTCGTGGAGATTTTAACAGTGCCACCTGCTGTACTGGATGACGGCAAATTCGATAACTAAGCTCAAGAGGGTGGTTTGGTCTTCATATCAACCTCACAGACGTCATTAAGTATGCTGAGGCCTTCAGTGTGCTTGTAAACGTAGCTAACGTTTATTCTGTATtccacattatattttttattgtttcatctGCATGTAAAGGCTAAGTGTACAATAAATCATCATGACACACAA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147893 lncRNA upstream 30598 1686319 ~ 1696261 (+) True G125119
TU147886 lncRNA upstream 103854 1621257 ~ 1623005 (+) True G125117
TU147885 lncRNA upstream 107989 1617620 ~ 1618870 (+) True G125116
TU147867 lncRNA upstream 133966 1545694 ~ 1592893 (+) False G125098
TU147909 lncRNA downstream 9023 1762304 ~ 1763325 (+) False G125129
TU147910 lncRNA downstream 9023 1762304 ~ 1763325 (+) True G125129
TU147928 lncRNA downstream 58073 1811354 ~ 1813285 (+) True G125144
TU148000 lncRNA downstream 207323 1960604 ~ 1993404 (+) True G125208
TU147954 lncRNA downstream 213385 1966666 ~ 1987569 (+) False LOC113535242
XM_034306844.1 mRNA upstream 498 1700988 ~ 1726361 (+) True sin3b
XM_034306566.1 mRNA upstream 33006 1628078 ~ 1693853 (+) True xpr1a
XM_034306820.1 mRNA upstream 146132 1562749 ~ 1580727 (+) True lhx4
XM_034306746.1 mRNA upstream 188005 1515223 ~ 1538854 (+) True qsox1
XM_034306745.1 mRNA upstream 225470 1475101 ~ 1501389 (+) False cep350
XM_026928023.2 mRNA downstream 2244 1755525 ~ 1759336 (+) True ndufb11
XM_026928020.2 mRNA downstream 6707 1759988 ~ 1765042 (+) True rhoaa
XM_026927979.2 mRNA downstream 22375 1775656 ~ 1784092 (+) True si:dkey-6n6.1
XM_026927980.2 mRNA downstream 22375 1775656 ~ 1784092 (+) False si:dkey-6n6.1
XM_026928618.2 mRNA downstream 36349 1789630 ~ 1802673 (+) False bgna
TU147818 other upstream 380274 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 620572 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 910202 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 50216 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 123760 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 462821 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2341988 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2467403 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile