RNA id: XR_004578534.1


Basic Information

Item Value
RNA id XR_004578534.1
length 5286
RNA type misc_RNA
GC content 0.44
exon number 18
gene id LOC113533440
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20222415 ~ 20442191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCCTTCTCTCAGCGGAGACGCGCGGCCGCGTGAACGCGCGATGTGTGTGGGACATTCAGTTTCGCGACTGACGCACAAGACAGGTCCGTACTTCAGCCGgTTATATAACAGATGACCTGAGATCTTTCACATACCTCCAAAGCAGCAGTCTCTGAGTAAGAAAGAGCTATATGCTGCTGTGACACACTAAATAGTTCCTCTCCTGCCAGTAACTTAATATGAGACATGATGATGCAGTTGCTTTCAGGCCTGTCATGGTATTGACAGAAAGTTCCACAGACAAAGATGATGTTTTGATGAAggtgaaatgaacaaaatagatCTGATAAGAGTGTTGATATTTTCAGTTAACCTGACAGTTTAAGCAGCAAGCATTACAagcttttaaatgaacaaatggtTCCCTGTGACAACAGTGTACCAAGAAAAAAGGAGACAAACAAGTGAACAAGCTTGAAGTTTCATGTGGGAACATCTCTACTAGTTAAAAACCATAATGTATAGTAGTTCACAGTCAGTCGGCCATGCTGAGGCTAGTCCACTGCATTCCCCCCATCTCCATTCTTCTCCCAGAATGGGCCACCGTCGGGTAAATGCTGGCAGAAGAGGTAGCGAGTGTGGAAGTGGCAGAAAGACCCTTTCTATGGAGAACATCCAGTCCCTTAATGCTGCCTATGCAGCCTCTGGCCCTGTCTACGTGAGTGATCATGAGGCTCTTGCCTCCACTGCCTACCCGAAAGGCACTATGACATTGGGCCGCAACACAAGCCGTGGAAAGACTGCCATCCTGGGCAGTAGCCCCAACATCAGCTCATCCTTGGGGCATCTTCATTTAGATTCAGTAGCATATGGAGATCATGGAGCCGTGCACCTACTCCCACAGCACCAGTGGCCTTCTTCACCACTGTTGAGACAAGCTGTGCGAGGTGTGGCCAGAAGAGAAGGAAATCCCCTGATAGAGCACCTAAGGGAATTGCAAATGGATAACACCATGTTCCGGAGAGAGCTAGACATGAGAGACAGCACTCTTGGTTCTTCGGTCAGCAGTATCAAAACCTTCTGGAGTCCTGAATTAAAGAAGAAACGAGGGATGAGAAAAGAGAGTGTGGCAAAGACATCCATGGGGAAGGAGCAGATGAGTGTAATGAAGGACAAGAACCAGCAACTCCAGATGACCATCCAGGCTTTACAGGAGGAACTCTATACCCAAAGAGACTTGAATGAGCTCCTACAGCAAGAGAACAGCGCAAGCTCATTAGGTTCACCCACTGACCGTTTCCCTTACCTGGAGCTCACCGAAGACAACTTCCATTATCTCCAGGCTGAGCATGAGCAGCAAACCAAGGAGCTTTTCCTTTTTAGGAAAACTGTGGAGGAAATGGAGCAGCGCATGAAAAAACAGAAGCAGGCACTGAGTACCCGGGACGAATCTATCAAAAAGTTGCTGGAGATGCTTCAGGAAAAGGGTCTCGCCAGGTCTGGGCTGCCTGATGAAGAGGGATTGAGGGTCTGCCGTGCTGAGGACACGCTGGGTCATCCGGGGGACATTCTagagcagaaagagaaggaaaacaaACACCTGAGAGATGATAGGTTTaactcacctgtctgtctggcAACTCAACAAGTGACTACTTGCTCGCTCAACCAAACATACCTGCTCCCTCAGCAACAGAAGATTTCAGACCAAATGaaaATTGATCAGCTGAAGCAGGACTTATCAAGAAAAGAGTCAGAGATGTTGGCCCTGCAGACTCAACTGGAAactttgaccaatcagaattcagactGTAAGCAGCACATTGAAGTCCTGAAGGAGTCCCTTTCGGCAAAGGAGCAAAGAGCGAATATCATGCAGACGGAGGTTGATGCTCTGAGGCTGCGTCTTGAGGAAAAAGAGTCCTTCCTGAATAAAAAGAGCAAGCAGCTTCAGGATATAACAGACGAGAAAGGCACTCTGACTGGGGAAATACATGACTTAAAGGACATGCTGGAGGTGAAAGAGCGCAAGATCATTGTGCTGCAGAAGAAGATTGAAAACCTACAGGACCAGTTGAAGGATAAGGATAAGCAGTTGGGATGTTTGAGGGACAGAGTGAAGTCTCTACAGACGGACTCCAGTAACACAGACACAGCCCTTGCTACTCTTGAGGAAGCCCTCTCTGAGAAGGAGAGGGTGATAGAGCAGCTtagggagaagagagagaaagaggagtggGAGAAGCAGGGGGAAATGGAAGTCTGTAAGAAGGAGAACAAGGAGCTGAAGGACAAGATTGCTTCCTTGCAGACACAGCTCTTGGAGAAAGAGAATCTGCTGCAAGGGAAGTCATTGGCCCTTGAAAGAGAAGAGTCATCAAAGATGAATTCAGAGATTTCAGAGCGATTAAAAGTCCTGGAAAAAGAGGTGACCTTCCATAAAGAGGAATGTGGAAAATCTAAGGCAGAGGTGGACCGACTTCTGGGAGTTCTTAGAGAGTTGGAGTCACAGTGCACCGAAAAGGACAAGGCAATCTCTGAGCTAGAGAGGCAAGTGAAGGAACGGAGTAATAAAAACCTGTCAAGTGTAAAAACCACCCAGATGGGAGAAACAAGACCCCCTGATGCAGCACCAGAGGCTCGTATTACCCAAGATTCAGTGCAAGAGACGGCTGAGAAAATCAAAGAGCTGGAGAAAGCTCTGCGAGAAAGCATGAACACCTCTACTCTTAGAGAGGCTGTGTGGGTTCAGGAGGAGCAAGCACACGCTCTAGCACAgagacagCTAGAAGAACTGATGGCTGCTCTGGAGAAGACAAGACAGGAGCTGGATATGACTAAGCAGCAGCTGTCCTCCACGCAAAATTCTCTTGCTGAGAGAGAAAGTCACCTGAGCAGCATGAGACAGGAGCGTCGAAAACAACTGGAGGAAATTCTAGAAATGAAGCAACAGGCTCTGTTGGCAGCCATCAGCGAAAAGGATGCTAACATAGCCCTACTAGAACTTTCTGCTCCCAAAACGAAGACAAGCCAAGAGGAAGTGATGGCcttgaaaagagaaaaggacaGGCTCATGTACCAGCTCAAGCAACAGACCCAAAGTAGGATGAAGCTCATTGCTGAGAACTATGAAGATGGTCACTTTTATccccatcatcctcatcatccacACCACGCTCACCCCGGACACACTCACTATCGTAGACCGTCAAGAGGACTGTCCACTCACAGCAATTCTCAACCTGAGCAACCTGAGCAACCTGAGCAACCTGAgcaggatGATGAAGAGGGCATCTGGGCATGATTTTCGGTCTGGCCTGGCCTGCTGCTCCTGTTCTGTTCAAAAGGgAAGTCCAATGCTGAAGCTATATCTATCACTGCACTGTCTCATCCTTATCTCTGTGAGGAGGGTCTCATCTTTAACCCGGGCGGAAGGGGAGGGGACggggagaaagaaaataaagaggagAGGAGTAAAAGATCAGaTTTCCAGCTCTCTGTTTAGAAGGAAGTGGGCAGAAAACTAATCGCTGACAGCTGCTGCTCTTCTCATCAGCTGCTCCTCTTCTGCTTCCTCTCTGAAGCTCCTCATCACCATTTGTACCATAATTGGACCCTGTCAGCACCATCATCGCAATTTACTCCAtatacactccatacacactCCACATACATGATGACACGACCACAAAACTTCAGTTCATCCATATGCATCCATAACACTCCCGCTGCACTACTATCATTAGTTATTGCTTCATTATTGGTGTTGTGAGTATTATTAAATATAGCAATCTAAATGTGATCATAGTCATTTACATTTGAAATGGTCTTGTTGTCCTTTTAGCCTGCCTTATAGGATTTCGAAAAGAAAATTTGAAAATCAGcttgttatttttcttattaaatgttatttgatGTCTAATACAGAATTCTGTTTCTCTACAATGTTCCATAGAAGCACTTGTTGATGATAGCATGCTTATCCAAGATTCACATCACTATTTTCTTTGAAGTCTCTGTAATAACGACAAAGTGGTGATTCACCTAGTGATTCATGGTGACGTAACAAACAGCAGCAAAGTTTCATGGGTCAAATGTTCTCTCATCTTTTGCCTGCTTCGCTAAATCAGGATGAAGTGTTGAACCTTGAGGAAAATATCTTCCTCATTTTCAACGGACTGAAAAGCACTCCTAGACATTTGTAATAACATGTCACATccatcacatttttattaagaTGTTAGTCTTCACCTGTGTGTTTTCCTTTGACAGTTATATGTTGTGTGCTTTTTGGGGACCTGTCAAAGGAAATAGTACTATAACTGCTTCGTAATGAGGGGAAGGGCTTACTAAATCACTGACCAGACCCTTAAACTTTGACCTGTGGCCGTAATGTCCTTAACGGTCTCTACCTGAAGCCAAAACTAgtgaagaaggaaggaaattgTAAATAggttgtttcatttttacacaaaatgtgcCAATAGTAACTTAGTATGATTAATTCTATGGATTCATGAACAAACAGGAGGCCGCCCTAGCTAAAAAGGTATGTATATGATTATAAATGCCTTGTATGATTTATTGAACATTATGTTAAATTGAAggttatgtactgtatgtatctgTGGTTCTTGGAAATTGTGGAGTATTGCCATTTACACAAGGCTACCAATAGCAAGGTTGACCCTACCATCACCAGTGCTAAGCTAGGTGTGGGGAGGGGGGGCTTCTGGCCCACCcaaaaaagcacatttatagCTAGGGGTTTTAACCGCGGTCTTGTTAACATTCTTCACAAAACCCAGTTCTATCTTGCTAGGAGCTAGCGCTTTAAGAAGCTGCAGTGAGTGACGCTGGCTAGTTCAATAAagagtttattttctctgaAACAGATGCCACACTGTGCCTTTTCCCCCTGACACTTGTACAATTTAATCAGAGGATATAATAGCGTGAAATGTATTTCAGTTTGTCTGGAATGTACTGGAATGTACTGTCGGAGTGCAGATCAGACTCATCCGAAAGTCAAAATACAGAACTGCAGGTCAGTGAGGAACAAAGTTGAAACAAAGTCATGttctaaaaaacatttaacaaaataatggcTGTGTGTACATGTTATCTTTAATCACAGGAATTAGGGTAGGcctggtttcatttttatcagCTGAAATCTGAAGGCTTTTCCTGTAGTTTGGTGCgtgaatgaaatgatttaataaaaatctgatgtGGCAGTGAGCACTTTTGGttatttgttctgtttaaattctcacttaaataaaattatttaaaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160256 lncRNA upstream 36869 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 207645 20014522 ~ 20014770 (+) True G135643
TU160219 lncRNA upstream 209648 20012567 ~ 20012767 (+) True G135641
TU160085 lncRNA upstream 216707 20005119 ~ 20005708 (+) True G135524
TU160034 lncRNA upstream 320048 19843945 ~ 19902367 (+) False LOC113533656
TU160652 lncRNA downstream 494932 20937123 ~ 20939070 (+) True G136057
TU160650 lncRNA downstream 505113 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA downstream 514183 20956374 ~ 20965468 (+) True G136056
TU161105 lncRNA downstream 904654 21346845 ~ 21347161 (+) True G136429
TU161109 lncRNA downstream 918648 21360839 ~ 21361880 (+) True G136433
XM_026925026.2 mRNA upstream 6510 20209756 ~ 20215905 (+) True tlr9
XM_034306640.1 mRNA upstream 13070 20188800 ~ 20209345 (+) True LOC113533362
XM_026925089.2 mRNA upstream 36797 20180768 ~ 20185618 (+) True LOC113533164
XM_026925086.2 mRNA upstream 51046 20051109 ~ 20171369 (+) True bsna
XM_026925094.2 mRNA upstream 283412 19931379 ~ 19939003 (+) True LOC113533168
XM_026925728.2 mRNA downstream 13113 20455304 ~ 20467426 (+) False wnt5a
XM_026925729.2 mRNA downstream 13114 20455305 ~ 20467426 (+) False wnt5a
XM_034306869.1 mRNA downstream 15015 20457206 ~ 20467426 (+) True wnt5a
XM_034306870.1 mRNA downstream 15372 20457563 ~ 20467426 (+) False wnt5a
XM_026925410.2 mRNA downstream 105114 20547305 ~ 20560196 (+) True LOC113533338
TU159806 other upstream 719772 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1760481 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 2173526 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2925532 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 3487080 16716133 ~ 16735335 (+) False bicdl1
trnae-cuc_20 other downstream 290209 20732400 ~ 20732471 (+) True trnae-cuc_20
TU160573 other downstream 302448 20744639 ~ 20747856 (+) True selenok
trnaa-ugc_2 other downstream 1245933 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 1246329 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 1247476 21689667 ~ 21689738 (+) True trnat-cgu_3

Expression Profile