RNA id: XM_034306315.1


Basic Information

Item Value
RNA id XM_034306315.1
length 1930
RNA type mRNA
GC content 0.52
exon number 4
gene id ccdc92
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27079096 ~ 27100750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgagagagagagagagagagagagagagagagagaaggaaagaaagcaagcaGGCGCTCTCTACTGACAGAGGAGGAGAACAGAAATCCCAACGGCGCAGCAGCGGCTGGAGATAACGTCAGgatgaaaataaacaatatgtCGCACCGTCTCCGTGTTTGGAAACACACTCTTACGCCGTGAATACTGAAGCTTTGGTGGgcgtgtgtgattgtgtgtgtgcttgtgtgtgagtgtgtatgtgtgtgagctggGCATCATGGCCTCAGAGAATGTGACCTTGGAGAATCAGCTTCACAGTGCGCAGAAGAACCTGCTGTTCCTGCAGCAAGACCACGCCAACACGCTGAAGGGCCTCCATGCGGAAATACGCCGTCTGCAGCAGCACTGcactgATCTGACGTATGAGCTGACGTGCCGGAGTTCTGATCCGAACGACGATGGTGAAGCACGTTGCAGAGAGCTACAGCGTCGCTgtgaggagctggaggagcagCTGAAGGCCAAAGAGCAGGAGAACAGCGAGCTGCTGCGTGAGCTTGAGCAGAAGAACGCCATGATCTCGGTGCTGGAGAACACGATCCGCGAGCGTGAAAAGAAGTACCTGGACGAGCTGAAGCTCAAGAGCCACCGGCTGGCCGTGTTATCCGGGGAGCTGGAGCAGCGAGCCGGCACCATCGCCTTCCTCACGGCGCAGCTCCACGCCACCAAGAAGCGCCTTCTAGAGGGCGGAGCCGCCTTCAAACCGTCCCCGCCGACTGAGCCTCGGCTCGACTCGCCCACCAACGGAGCCGGCAAGCAGCCGGACACACCACGCAGGCGCATGCGCAAGAGCCTGTCACAGCCGCTGCACTGCGagtacacagagctctacagggTGGGCGCGGCCGACGGTCGAAGAATCGTCCTTAGAGACGCCACAGGAACGATGCCCGACCCCGCACCGTTCCTGCAGGCCCGAGACACGCCCACTAACGCCGACGCACAGCCAGTGCTACGCGAACGACCCCCTGTAATCCCACCCATCGCGTCCGCAACAAGCCCCGCTCATGCTCCTGTGCCTCCAAGCCCCAGGCAGCAACGAGGCTCCGCCCACATCGGCGTGGCACACAGGATTCATCACCCACCTGCAGAAGTGGAGACACTCGCTGTGGATCAGGTTAGCGGAGAGAAGGTGGTGCGTAAACCATCAGGCACTGACAGaactgtttaaacacacacacacacacacacacacatcaacagtGTCTTACACTCACACTGATTACAGCCAATACAGTATGAGCAGGACTGAAAAGAAAACCACGCAAAcgcacacactcaaacacacatacacaagcagtCTATAGAAATCACACTATATATCTCTCAATACTATAACACTGGAATAATTAATAtagccacacaaacacagcctgAACAAAGCAGTTAAAACACTGGATGACACACACTGGGACATACTCTAGCTTCACGGGATGGTGGCGTAAACAAGAGAACGGATGTGTGCTGCTAATAAGACTTAACGGGACGGGAGAAAAGCATCGGCCTCTGTATAGCCTGCTGTTTATGCAAAACTGCGACAAGCAAGAAGATTTTTTCATGTTCAATATCACATCTTTTTTGGACATCGGTTGGAAACGAGTGTACGCATGCCAAATGTTTCACTTTCCTTACCTCATTTACACGTTATAGATTTGCTTTCTGTCATCATCTGgcttgcgtttttttttttttgtcttaaaacaAGCTCAGTATAAACAGCCAAATCTTGTCATCGCCTTTCATTATAGATGCATATTTATTGATGCGCACTGCAGTAGTAAAGCAGGTTTGCACTGTCCTTCTGCCTGGTCTGTACAGGTCGCTCACATTACTGTAGAATCCTGCTGCTTTCCCAAACTGTAACACATAAAGCAAGTGATAAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164945 lncRNA upstream 179679 26878636 ~ 26899417 (+) True G139647
TU164955 lncRNA upstream 184566 26891077 ~ 26894530 (+) True G139653
TU164826 lncRNA upstream 559614 26512892 ~ 26519482 (+) True G139551
TU164785 lncRNA upstream 655402 26400191 ~ 26423694 (+) True car15
TU164434 lncRNA upstream 1042963 26032594 ~ 26036133 (+) True G139235
TU164991 lncRNA downstream 6179 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 6179 27106929 ~ 27108878 (+) False G139686
TU165045 lncRNA downstream 82271 27183021 ~ 27261741 (+) False fam160b2
TU165069 lncRNA downstream 187726 27288476 ~ 27295317 (+) False adam9
TU165078 lncRNA downstream 238243 27338993 ~ 27341506 (+) True G139756
XM_034306547.1 mRNA upstream 89514 26889333 ~ 26989582 (+) True ncor2
XM_034306357.1 mRNA upstream 222113 26819957 ~ 26856983 (+) False ep400
XM_026945811.2 mRNA downstream 147837 27248587 ~ 27261740 (+) True fam160b2
XM_034306748.1 mRNA downstream 166425 27267175 ~ 27295337 (+) True adam9
XM_034306749.1 mRNA downstream 166425 27267175 ~ 27295337 (+) False adam9
XM_034306452.1 mRNA downstream 197142 27297892 ~ 27331548 (+) False ogdha
XM_034306451.1 mRNA downstream 197142 27297892 ~ 27331548 (+) True ogdha
XR_003404685.2 other upstream 349265 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 512333 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 601637 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 602219 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 602746 26476278 ~ 26476350 (+) True trnaa-agc
TU165116 other downstream 327977 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 918721 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2387223 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2387799 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2388592 29489342 ~ 29489414 (+) True trnar-ucg_3

Expression Profile