RNA id: XM_034306323.1


Basic Information

Item Value
RNA id XM_034306323.1
length 3038
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC113533125
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19398738 ~ 19404045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAAACTGCAGTATTTTTTGATCATCAAGAAAGATTTACAACAATTTTGGTGTCTCTGGTGGGACCGTGATGTTCTCCGTCCATGTGCTGTGACAACCCAGATGACAGACAACATCTGATCTGATCCGGTGATCCTGTTTCTGTGCTTCTGTGACAAACATATGCCAGCTCAGGGGTCAAATTGGAAAATGGCAAAACCAAAGatgaagctgtttatttttcttatccTTTTTGGTGTTCTAACTGTTATCTTCATTTCAAAATGGAACCATAATTTCAGGCATGCTGCTGTTTACATCGCTGGAAATCTGTATTGGGGCACACCATCATCTATAAGCAGTAGTTTGGATATACACAATACCCCCATATCTATGAAGTCTATAATCCCCATTAAAAACTCAAGCCATTTTGCAGTGTCTGCATTCATTGATCACAGGATCAGTAAAGCTATTCGAGTTATCAgcataataaaaagaaacagcatGCAGCCACTTTATTGCTTCTACTGCAACAATGACCGAGCTTGCGAGTCTACTATGGCTAAAATTGAGATACACAGTGATCATTTTGACTTCCCATTTGGTGCTTCAGATGTGCTGTGCCAGGGCAAACACACCCAAAATGCGACTCATGTCGCCATTTCAGCTGAAATTTCAGACAATAATAACCTAGACTTCCTGCCAGTAAAGAACAGAGTGAATAATGAATCATTCAAGTACAACTTCACCATCTGTATCTCAAGTCTTTTTGGGGACTACAATAATGTTCTGCAGTTTGCTCAAAGCATGGAGATGTACAAGCTTCTTGGTGTCCAACGAGTCGTAATCTACAACACCAGCTGTGGTTCTGACTTGGACAAACTCCTACAGCACTATGAGAAAGAAGGAATTCTAGAGATTGTGCCATGGCCTATTGACCAGTTCCTTAATCCATCTGCAGGATGGCATGCCAAATTGCATAAAGGGGAACTCCAGTACTATGGCCAGTTGGTAACACTCAATGAGTGCATTTATAGACATATGTATGAGTCCAAATATGTCCTGTTGAATGACATTGATGAGATCATCATGCCCTATAAATACGCTAACCTTGCTTTACTGATGGAGGATCTGCAACAGGAGCACAGATATGTGACTGTATTTATCATAGAGAACCACATCTTCCCCAAGACACAGTTTGAAGAAAGTGGCAAGTTTCGCAGGCCAGAATGGAAAAATATTCCTGGTATCAATATTATGGAACACATTTACAGAGAACCAGACAGAAAGAACATCTTCAACCCAACAAAGATGATCATCAACCCGAGGAACATGATGCAAACCTCAGTGCATTCCAGCCTGCAACACATTGGAAAGGTCTATCGGGTTCCTCCCGATGTGTGTAGGATCATTCACGTGAGAACACCACTACAGGGGAGTCTTACCAAGGAGCAATTAATTGTTGACACAAGAGTGTGGGACTTTGCACAAGAACTGATAACAAATGTTAATAGGGCACTAAAATTATCAGGTTTGTTGAAAAGTCAAAAGTGATATGGGTTTTtggtttgtctgtttattttttcttttggtgctctgaaaaaaaaaaaaagaaacaaattacaAGGAATTCTAGCAAGGGAATGAGTTTGTtgaatttcattaaaaagttCTAAGAACAGAAACTTGGCTGTTTTTAACTTTACATGGTTGGCATACTAGTTTGTATGAGTAAATTATGCTCAGGTCATGCTGTGTGTAATAggacacatttacattacatttagtGCTGTAATTTactctcaccatccactttattaggaacacctgtacacctgcccaTACATGTCGTTATCTAATCACTTATTCATGCAGCACCAGCGCAAtgcaaacattaataaaacattaataaaacattaactcAGCGTGTATGCACTAGCTGTACCCAACATAGGTGgatagataaatatatagaataaagctgttgtttggttttatcttttatctacTCCAGAGGCTGATTTGAAATTGATGATTACTGAATTCTGAatattcatttacttatttatttatttttttacctttttaattGCTGGAGCTGAACAAAATCATGCCTatgattaacattttaatatagctgctttaatagtatagtatataataatagCATAGGCAATATTGGCATTTTGAAAGAATTTTTCAGCCTGTTtcagaaagaaatatttaaatgtgtttttaccTAAACTCCTGTGTCGTGATGTTCTAAACATGCTGTGTACTTATTTCAAACTAGGGGAGAGTGATATGACTTTTTACATCATGAAAGATTAAAATGGCCCCATCTGTAAAATGCATCTcaatcttttttcccccagattgCATGTACTGTTGTACTGAAAATACTCAGACATGACATCGCAAGTTATTTTATGAGCAAGACTTTGCTCGATTAGCGTTCTCCCTGACAGTAATAACCAAAAGTAGGCAGTTCTTTAGCTTATGTTTCCTCTTCATTGTATTTGGAAACATGGAAGCATAGCTGTAATTGTATGCAAAATAAGCAAAGGCAAGACGGACAGGTCGGGGAAACGCTACAAATGTGTTTAAGCACAAAAGCCAGAAGCAGTGCTGAAGTACACAAAGGTGTTTGAAAAAAGGCACTTTTTGTGAGAGAGACATCAAATAATTTTCTAACATTGCCATTCCACAGCTCTACACTGAATGCTGTAAAAACTGAAACAGTGAAACACAATTTGCTTAAAATAAtctcatttatattttgttgggaaatgtttattcaaatttgttttgtcaatttttaaatgttaacacTTTTTAATTGTTAAGTGCCAGAGAGTGTAGTTTGtgatatctgtgtgtatgtgtgtgcacgtgtgtgttttcattGATGTTGTATCAAACTTTGCTGTTTTTAACTTTACATGGTTGGCATACTAATTTGTATGAGTAAATTATGCTGAAATTATTCATATTCCTGCAATCAATATTATAGAACACATTTACAGAGAACCAGAaggaaagaacatcttccaTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159680 lncRNA upstream 75467 19321962 ~ 19323271 (+) True G135169
TU159675 lncRNA upstream 129070 19269334 ~ 19269668 (+) True G135164
TU159609 lncRNA upstream 443537 18949227 ~ 18955201 (+) True G135101
TU159598 lncRNA upstream 514957 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 525117 18870421 ~ 18873621 (+) True LOC113533586
TU159822 lncRNA downstream 4509 19408554 ~ 19484934 (+) True G135292
TU159824 lncRNA downstream 28587 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA downstream 81853 19485898 ~ 19486457 (+) True G135309
TU159873 lncRNA downstream 154189 19558234 ~ 19559272 (+) True G135341
TU159898 lncRNA downstream 210830 19614875 ~ 19615657 (+) True G135363
XM_026925137.2 mRNA upstream 9076 19270626 ~ 19389662 (+) True ralgps1
XM_026925139.2 mRNA upstream 9076 19270626 ~ 19389662 (+) False ralgps1
XM_026925138.2 mRNA upstream 9076 19270626 ~ 19389662 (+) False ralgps1
XM_026925056.2 mRNA upstream 134102 19245748 ~ 19264636 (+) True zbtb34
XM_026925119.2 mRNA upstream 198633 19146445 ~ 19200105 (+) True lmx1bb
XM_034306355.1 mRNA downstream 14705 19418750 ~ 19419938 (+) True LOC117595725
XM_034306343.1 mRNA downstream 80130 19484175 ~ 19489558 (+) True LOC113533274
XM_034306808.1 mRNA downstream 97448 19501493 ~ 19502708 (+) True LOC117597842
XM_034306334.1 mRNA downstream 173957 19578002 ~ 19598056 (+) True map3k12
XM_026925147.2 mRNA downstream 267376 19671421 ~ 19682627 (+) True stac3
TU159255 other upstream 936804 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1349849 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2101855 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2663403 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2798153 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 83442 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 818370 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 818370 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 818370 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 818370 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile