RNA id: XM_034306334.1


Basic Information

Item Value
RNA id XM_034306334.1
length 5076
RNA type mRNA
GC content 0.47
exon number 16
gene id map3k12
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19578002 ~ 19598056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgatcacactttttcttcatttcttcatcacactttttcttcattatgtTGTTGATGCaaacaagagcttcagttattgttcacatcaaacatcagaatgaagaaaacgTGATCTCTGTGGCTTTGATCGTGGAATGGTTGTAGGTACCAGAAgtgctggtttaagtatttcagaaactgctgatcattttcacacacaacagactctAGAGTTATCACAGAATGAGGCGAAAAAcgaaaaacattgagtgagcaacaggtctgtgggtggaaacgtcttgttgatttgagaggtcagaggaaaatggccagattgtttTGAGCTGCCAGAAAGGATATACTTGATCGACGAGGCCCGTTTGCCCGATGGGACTCATTCTGAATCGGCTGCACTCACGCGGGCTCCTTAGAAAACAAGGAGAGAAGGCGAGCGGAGAGGATACTCACAGAGAGACGACGCTGCAGCCGGAATCCGAGGAGAAAACAATCTGATCCCACCCCTCACCTGACAACGCGACAACACCAGGCTCGTGAGATACGGTATTTCGACATTAAACATCAGTGTTTCAGCCCTTTCGTGTGAACATTAAGGGCTCCAGATCTTGGAGTTTCTTAGATGAGTGTGGCCGCCCATGGCTTGTGTCCATGAGCAGTGTCCCTCCCCCTCCCTTTCAGGATTCAGCACCCCAATTTCTGACACTCCATTTCGCCGGCCAGACTCTGATGTGGCTGCATGTACCCCGGATACTGAACTGACCCCCACACAGTGTGTCCTGCGCAACGTATTGTCCATCGATCCTGTCGGGGATGGGAACCACACACGAGGCAACACCCCCACTCCTAGCGATGACCCTGCACAGTTCTCCAACAGTGTGCTGAAGCTGCACGAAGGTGGAGCTGAAGGAGGAGCCATGCGCAACCAGTCGGAGAGCTTTAGGCTGCAGGCAGGTGGAGGAGGCTTTCTGGAGGGACTTTTTGGTTGCCTGAAGCCGGTGTGGACCATGATTGGCAAAGCATACTCTACTGAAAACAAGCAGAGCCAGGAAGAGTCCTGGGAGGTGCCCTTTGAGGAGATCTCAGAGCTCCAGTGGGTGGGCAGTGGGGCTCAAGGAGCAGTGTTCCTGGGCAAGTTCCATGGTGAAGAAGTGGCCGTGAAGAAAGTAAGAGACATCAAGGAAACCGAGATCAAACACCTCCGTAAGCTCAAGCACCCCAACATCATCACGTTCAAGGGTGTGTGCACACAAGCTCCATGTTACTGCATTATCATGGAGTACTGTGCACAGGGGCAGCTGTACGAGGTTTTGAGAGCAGGGAGAAAGATCACACCATCACTGCTCGTTGACTGGGCCATGGGTATCGCAGGCGGCATGAACTACCTCCACCTGCACAAGATCATTCACAGAGACCTCAAATCACCCAATATGCTGATTACACATGATGACCTGGTGAAGATCTCAGATTTTGGCACATCGAAGGAGTTGCGAGATAAGAGCACAAAAATGTCCTTTGCCGGCACCGTGGCTTGGATGGCACCGGAAGTCATAAGAAATGAACCGGTCTCAGAGAAAGTGGATATAtgGTCGTTTGGGGTGGTTCTCTGGGAGATGCTCACAGGTGAAATCCCCTACAAAGACGTGGACTCTTCAGCTATTATCTGGGGCGTGGGCAACAACAGCCTCCAACTGCCTCTGCCCGAAAGCTGCCCTGATGGCTTTAAGATCCTCTTAAAACAATGCTGGAACTGCAAGCCCAGAAATAGGCCATCATTCCGACAGATTCTGCTGCACCTGGATATTGCCTCGGCCGACGTGCTATCCACCCCACAGGAGACCTACTTCAAATCACAGGCTGAATGGCGTGAGGAGGTAAAGCAGCATTTTGAGAAGATCAAGTCTGAGGGAACATGTCTGCACCGACTGGACGAGGAGCTCATTAACCGTCGCCGTGAAGAGCTCAGGCATGCCCTTGACATCAGAGAGCATTATGAGAGGAAGCTGGAAAGAGCCAACAACCTTTACATGGAACTGAGTGCTGTCATGCTACAGCTAgagctgaaagaaaaagaactgCTTAGAAGGGAGCAGTGTCTGGATAAGAAATATCCTGGGCTGTTCAAACACCATCCTTCAAACACAGTGGACAAACTCATTAAGAAGAGGAATGTACCCCAAAAGCTTCCTTCTCATGGCAAGAGACCTGACCTCCTAAGATCAGAGGTCATCCTCCCTAAAATGGACCCTGGTGTGGTGCAAGTGACGGTTCCTTCTTGTGCCAACCGGACCTCCACTTCCCCAAGTCGTGCCCGGAGGGTTAAAACGCGGCATCGCAGGGGGGGCCGAGGCAGCAGTGGTGATCTCTCGGGGCCCAAGCACGCCGCTGGAACCtccaccagagagagagacgcccGCATTGGGCACCGCGGCACCCAGTGGCACTCCAGCAACCGATCAGACAGTGGTACTGCTCCAAGAGGAAGCCAGCTGGAAGCCCCTCCACTAAAACTGTCCTCCTCCAGCCCGGACCTGCTTTGCTCCACCCATGGAGCTGAGGGCGGAGCCAGTGGTGGGGCTGGCAGTCTGAGCGTGTGTGAAGGGCTTGTTAGCGGAGTCCGGGGCGTGGCTGAAGCTGCTGTGGGATTGGATGAAACTCCGCCACGAAGCGACACAGCAAGCGAGGACGCTGCGTCACTCCCATTCTCCAGCAGTCCTGACTCACCATGCTGCGCAAGAGGTGTGGCTGTGGGACGGGGACACACTCTGGGGGAGGAAAGGGAGGAAGGAGCCGGGGCAGTGCGATTGCCGAGGGGAGCCAGTGGCAGTCATTTGACTCCATCAGCCATACTTTACAGAGCAGCTATCACACGCAAGCAGCGCCGTGGCGTATCttcagaggaagaggagggagaAGTAGATAGTGAAGTGGAACTGCCAAGGAGACGACGGCCAACCAGTATATCCAAGTGCCAGTCCGTGTCCACCTTCAGCTCAGAGAACTTGTCTGTCTCTGATGGAGAGGAAGGCCATACCACTGACCACTCTCACAGCGGCACACCAGATGTGGTCAGCACCAATACCGATGAGCGGCTGGACGATCGAAGTGATGACCTCATCTCACAAGGCTCTGAGATCCCAGCTGACATCACAGACCCTGCGATCTCGGAGAGGGAGGCGGCTGCTCTGGAACAGGAGAGAGCAAATTTTGATCTGGAGCAAAACATTTTGGAGACCCGGGCGTTGTGTGAAGATTCGGATTGCGACAGTGCCGAGCTAGACCAATCGGGGAGTGGAGAACCAAGTCGCCCCCCGAGTGCCGGAGGCTGGGGTCAGGGTCCTCAGAACTAACAAACATGTGCATACAAAAACACCCAGCCCTGTGcatttgtatatatatgtatatatgttcaCCACAACACCTACCAGCACACTTCCTTATTTGTAGTATCACCGCAACACCTGATACACCAGACATACACTTTTACACTAACACCATGAAATTGCCTATCTTTGGGCCTGTAACAAACTGGTGATGCAGAATCAATTgattaatgaaaaaaagcaaatattagCCACTTTAAGAACATACTTTCACAAGCTGGTCATGATGTCACTGAGATTCCAAAGACCAGGGCCCCattctttgtacattttttgGCTCTCATATCAATATaatttgaatcatttgaaatAATTCCATGAAAATTTTGAATTTAGTTACTCAAAGCAAGTTCAAggttacaggtgttcctatctTTTCCTAATCAGCTCCAACACATACTCATAAAGCTTGAAATAAATTACAGTCGTACCTGTAGTTGTACTTACATATACCTATTATACTTGAACTCATTTACGTCTTCAACAAAAAATAGGGCTACACACTTTTCCATAGATAATGATTATGAAAGGTGCTGATTCTTATTATCTGGAGGCTTTATAATAACACATACTGTCACCCTCATATCTACATCCACTATACATGTCTGTTCCTGTCTAAGATCATTATGGCTTCATTTCAACCACCAAGACTCAATAGCGATCTAAATGTTCATTAGAACTGTTATCCTGCGGGATTGGTCTAGGAATTGAAGAGAAATTTGATGTCTTCTATAAGATATAAGATCTATCTTCTTTGATGTCTACAATACGTAATAGCAGAGTTGTAGAGCAACACTTTTGTTAGCTAGAAATATCAATGCTCATTATCAGGAGTGTCATTTTAGCCCGctcacccaaacacacatataaacacaatccTATTTAGCGTCTGTTTCCAAATCTTCAAAATGTATCCCTCACTGTCTCTAGATTTACAGActttgggcctcatttatcaaccatTTACTAaagttgtatgtaaatgttttcataggccAAACAAAAGTTTtggtaatgctgattttctttttctgttcatgtgtgcatgttgataaatgccattCACTCATAAATTACCAGGCTCGTTGCCAGCACGgttgatttatatttagagaaattatttacatttacaaaactCCATGAAAGGCAAAGTTCAGAGAGGtgaatgacaaaatgatgaccaaatatagaaataacacctctttccagtaatgcagctcagccaatgCAGCGCATTGCCTTCCACAGGCACAGACTCACTTACAGTCTTCCTCTTAtcatagggtgccattactttgcCCTAATTGATTGGCTTatcttatttttcttaatttatggatttgatTTTTCATTAGTCACAAAatgagtttcacaaaaaaaattgtgtcattgAAATAAATTGTCCATTTAAACTACacagcataataataaaaaaacatgcctgtTATATGATTTGAATATGAAGATATATGAAGTCTTTCAGTTGTTAGTCTCCTTAcccataaatttacacaaactcaggcgTTTTTCCAAACTAACTGGGCTTTCATTGATACCACTTCACTAGTGTAAATGCACTTTTGAACAAACttttgtttgcatgttctccctgtgctttgggggtttcctctgggtactctggtttcctcccccagtccaaagacatgtgttgtaggcatTGGCATTTCAAAAttgtagt

Function

GO: NA

KEGG:

id description
K04423 MAP3K12, MUK; mitogen-activated protein kinase kinase kinase 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159873 lncRNA upstream 18730 19558234 ~ 19559272 (+) True G135341
TU159824 lncRNA upstream 61257 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA upstream 91545 19485898 ~ 19486457 (+) True G135309
TU159822 lncRNA upstream 93068 19408554 ~ 19484934 (+) True G135292
TU159680 lncRNA upstream 254731 19321962 ~ 19323271 (+) True G135169
TU159898 lncRNA downstream 16819 19614875 ~ 19615657 (+) True G135363
TU159884 lncRNA downstream 21259 19619315 ~ 19627828 (+) True G135352
TU159885 lncRNA downstream 27248 19625304 ~ 19698739 (+) True G135353
TU159931 lncRNA downstream 106206 19704262 ~ 19704467 (+) True G135393
TU160018 lncRNA downstream 118581 19716637 ~ 19716979 (+) True G135466
XM_034306808.1 mRNA upstream 75294 19501493 ~ 19502708 (+) True LOC117597842
XM_034306343.1 mRNA upstream 88444 19484175 ~ 19489558 (+) True LOC113533274
XM_034306355.1 mRNA upstream 158064 19418750 ~ 19419938 (+) True LOC117595725
XM_034306323.1 mRNA upstream 173957 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA upstream 174985 19398738 ~ 19403017 (+) False LOC113533125
XM_026925147.2 mRNA downstream 73365 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA downstream 74450 19672506 ~ 19682627 (+) False stac3
XM_026925225.2 mRNA downstream 125966 19724022 ~ 19730524 (+) True LOC113533240
XM_026925227.2 mRNA downstream 125966 19724022 ~ 19730524 (+) False LOC113533240
XM_026925228.2 mRNA downstream 125966 19724022 ~ 19730524 (+) False LOC113533240
TU159806 other upstream 75359 19487487 ~ 19502643 (+) True G135287
TU159255 other upstream 1116068 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1529113 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2281119 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2842667 16716133 ~ 16735335 (+) False bicdl1
XR_004578531.1 other downstream 624359 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 624359 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 624359 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 624359 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 624359 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile