RNA id: XM_034306355.1


Basic Information

Item Value
RNA id XM_034306355.1
length 1189
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC117595725
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19418750 ~ 19419938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATACACAATACCCCTATATCTATGAAGTCTATAATCCCCATTAAAAACTCAAGCCATTTTGCAGTGTCTGCATTCATTGATCACAGGATCAGTAAAGCTATTCGAGTTATCAgcataataaaaagaaacagcatGCAGCCACTTTATTGCCTCTACTGCAACAATGGCCAAGCTTGCGAGTCTACTATGGCTAAAATTGAGATACACAGGGATCATTTTGACTTCCCATTTGGTGCTTCAGATGTGCTTTGCCAGGGCAACCACACCCAAAATGCGACTCACGTCGCCATTTCAGCTGAAATTTCTGACATTAATAACCTAGACTTCCTGCCAGTAAAGAACAGAGTGAATAATGAATCATTCAAGTACAACTTCACCATCTGTATCTCAAGTCTTTTTGGGGACTACAATAATGTTCTGCAGTTTGCTCAAAGCATGGAGATGTACAAGCTTCTTGGTGTCCAACGAGTCGTAATCTACAACACCAGCTGTGGTTCTGACTTGGACAAACTCCTACAGCACTATGAGAAAGAAGGAATTCTAGAGATTGTGCCATGGCCTATTGATCAGTTCCTTAATCCATCTGCAGGATGGAATGGCAAATTGCATAAAGGGGAACTCCAGTACTATGGCCAGTTGGTAACACTCAATGAGTGCATTTATAGACATATGTATGAGTCCAAATATGTCCTGTTGAATGACATTGATGAGATCATCATGGCCTATAAGTATGCTAACCTTGCTTTACTGATGGAGGATCTGCAACAGGAGCACAAAGATGTGACTGTATTTATCATAGAGAACCACATATTCCCCAAGACACAGTTTGAAGAAAGTGGCAAGTTTCGCAGGCCAGAATGGAAAAATATTCCTGGTATCAATATTATGGAACACATTTACAGAGAACCAGACAGAAAGAACATCTTCAACCCCACAAAGATGATCATCAACCCGAGGAACATGATGCAAACCTCAGTGCATTCCAGCCTGCAACACATTGGAAAGGTCTATCGGGTTCCTCCCGATGTGTGTAGGATCATTCATGTGAGAACACCACTACAGGGGAGTCTTACCAAGGAGCAATTATTTGTTGACACAAGAGTGTGGGACTTTGCACAAGAGCTGATAACAAATGTTAATAGGGCACTAAAATTATCAGGTTTGTTGAAAAGTCAAGAGTGAtatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159680 lncRNA upstream 95479 19321962 ~ 19323271 (+) True G135169
TU159675 lncRNA upstream 149082 19269334 ~ 19269668 (+) True G135164
TU159609 lncRNA upstream 463549 18949227 ~ 18955201 (+) True G135101
TU159598 lncRNA upstream 534969 18883368 ~ 18883781 (+) True G135090
XR_003403429.2 lncRNA upstream 545129 18870421 ~ 18873621 (+) True LOC113533586
TU159824 lncRNA downstream 12694 19432632 ~ 19516745 (+) True G135294
TU159840 lncRNA downstream 65960 19485898 ~ 19486457 (+) True G135309
TU159873 lncRNA downstream 138296 19558234 ~ 19559272 (+) True G135341
TU159898 lncRNA downstream 194937 19614875 ~ 19615657 (+) True G135363
TU159884 lncRNA downstream 199377 19619315 ~ 19627828 (+) True G135352
XM_034306323.1 mRNA upstream 14705 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA upstream 15733 19398738 ~ 19403017 (+) False LOC113533125
XM_026925137.2 mRNA upstream 29088 19270626 ~ 19389662 (+) True ralgps1
XM_026925139.2 mRNA upstream 29088 19270626 ~ 19389662 (+) False ralgps1
XM_026925138.2 mRNA upstream 29088 19270626 ~ 19389662 (+) False ralgps1
XM_034306343.1 mRNA downstream 64237 19484175 ~ 19489558 (+) True LOC113533274
XM_034306808.1 mRNA downstream 81555 19501493 ~ 19502708 (+) True LOC117597842
XM_034306334.1 mRNA downstream 158064 19578002 ~ 19598056 (+) True map3k12
XM_026925147.2 mRNA downstream 251483 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA downstream 252568 19672506 ~ 19682627 (+) False stac3
TU159255 other upstream 956816 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1369861 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2121867 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2683415 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2818165 16580453 ~ 16600585 (+) False mtmr3
TU159806 other downstream 67549 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 802477 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 802477 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 802477 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 802477 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile