RNA id: XM_034306453.1


Basic Information

Item Value
RNA id XM_034306453.1
length 4201
RNA type mRNA
GC content 0.50
exon number 21
gene id ogdha
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27297892 ~ 27331548 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATCTGGCTGTGCAGTCGCTCATCAGAGCTTATCAGTCATGGGGCATCATAATGCCAACCTCGACCCGCTCGGCATCAGTTGTGTAAATTTTGACGAAGCCCCAGTAGCTACTGGGTACCAGCATGTTGGATTCTACGGATTGGAGGAGTCGGATCTGGATAAAGTGTTCCGCCTGCCCACCACCACCTTCATCGGGGGCACGGAGAGCGCTCTGCCTCTGCGGGAGATCATCCGCCGCCTggagatGGCGTATTGCCAGCACATAGGAGTGGAGTTCATGTTCATTAACGACCTGGAGCAGTGTCAGTGGATCCGTCAAAAGTTTGAGACTCCTGGGGTCATGCAGTTCAGCCTGGAGGAGAAACGCACACTGCTGGCCCGCATGGTCCGCTCCaccagGTTTGAAGAGTTCCTGCAGAGGAAGTGGTCCTCAGAGAAACGTTTTGGCCTGGAGGGTTGCGAGAGCCTGATCCCCGCCCTCAAAACCATCATCGACAAATCCAGCGAGAGCGGCGTGGAGAACGTCATCATGGGAATGCCGCACAGagggcGCCTGAATGTGCTGGCCAACGTGATCAGGAAGGAGCTGGAGCAGATCTTCTGCCAGTTCGACTCCAAGCTGGAGGCTGCAGATGAGgGTTCAGGAGATGTGAAGTACCACTTGGGCATGTACCACAGGAGGATAAACCGTGTGACAGACAGGAACATCACTCTGTCTCTGGTGGCTAACCCGTCTCACCTGGAAGCCGTTAACCCGGTTGTACAGGGCAAAACCAAGGCCGAGCAGTTTTACTGCGGGGACACCGAGGGCAACCGgGTGATGTCCATTCTGCTCCACGGTGATGCCGCGTTCGCCGGCCAGGGCATCGTCTACGAAACCTTCCATCTGAGCGACCTGCCATCTTACACTACACACGGCACAGTGCACGTGGTCGTCAACAACCAGATTGGCTTCACCACTGATCCCCGCATGGCCCGCTCCTCTCCGTACCCCACCGATGTAGCACGCGTGGTGAACGCTCCGATCTTCCACGTTAATGCAGACGACCCGGAGGCCGTCATGTACGTGTGCAACGTCGCCGCCGAATGGAGAGCCACCTTCCACAAAGACGTCGTGGTTGACCTGGTGTCTTATCGGCGTAACGGCCATAACGAGATGGACGAGCCCATGTTCACACAGCCGCTGATGTACAAGCAAATCAGGAAGCAGAAGCCGGTGTTGCAGAAATACGCTGAGAAACTCATCGCTGAGGGAGTCGTCTCACGCCAGGAGTATGAGgaggAGATTGCCAAATACGACAAGATCTGTGAGGAGGCTTACGCTCGCTCTAAGGACGAGAAAATTCTCCACATCAAGCACTGGCTGGATTCCCCTTGGcctgGTTTTTTCACACTGGACGGCCAGCCCAAAAGCATGACCTGTCCTTCTACAGGATTGAGTGAGGAGGAGCTCACACATATCGGTCAGGTGGCATCATCCGTGCCTGTGGAAGACTTCACCATTCACGGGGGTCTGAGTCGGATCCTGAAGGGTCGTGGTGAGATGATCCGGAACCGGATGGTGGACTGGGCTCTGGGAGAATACATGGCCTTCGGTTCTCTGCTCAAAGAGGGGATCCACGTGCGTCTCAGCGGCCAGGACGTGGAGAGAGGAACCTTCAGTCACCGTCACCACGTCCTTCACGATCAGAACGTGGATAAGAGGACGTGTATCCCCATGAACCACGTAGCCCCGGACCAGGCTCCCTACACCGTGTGCAACAGCTCGCTGTCTGAGTACGGagtgctggGTTTCGAGTTGGGATTCGCCATGGCCAGTCCTAACGCTCTGGTTCTGTGGGAGGCCCAGTTTGGAGACTTCCACAACACGGCCCAGTGTATAATCGACCAGTTTATCTGTCCCGGACAGGCCAAGTGGGTCCGCCAGAACGGCATAGTCCTGCTGCTGCCGCACGGCATGGAGGGCATGGGTCCTGAGCACTCATCAGCTCGCCCTGAGCGTTTCCTGCAAATGTGCAACGACGATCCTGATGTTTTCCCCAAAATCACGGACGACTTTGAGGTGCGTCAGCTGTACGACTGTAACTGGATCGTGGTGAACTGCTCCACTCCTGCCAACTACTTCCACGTGCTGAGGAGGCAAATCCTGCAGCCCTTCAGGAAGCCGCTCATCGTTTTCACTCCCAAATCTCTGCTACGCCACCCAGAGGCCAAGTCCAGCTTTGACTTGATGCTGCCTGgcacacATTTCCAGCGTGTGATCCCAGAGGAAGGTCCTGCAACCCAGAACCCAGCTGCAGTGAAGCGTCTGATCTTCTGCACAGGGAAAGTTTACTACGAGCTCACACGTGATCGCAAAACTCGTGACATGGAGAACAGCGTGGCCATTGCACGTATTGAGCAGCTCTCTCCGTTCCCCTTCGACCTGGTCAAGGCCGAGACGGAGAAATACCCCAACGCCGAGCTGGTGTGGTGTCAGGAGGAGCATAAGAACCAGGGCTACTACGATTATGTGAAGCCTCGCATGCGCACCACCATCGACCGTGCCAAGCCCGtctggtatgCTGGTCGTGAACCTGCCGCTGCTCCAGCCACCGGCAGCAAGAACTCCCACCTCCTGGAGCTCAAGCGCTTCCTGGACACTGCCTTCAACCTGGACGCCTTCAAAGATCACGTCTAATCACGCATCACACAAAATGCTTGTTATCCCACCTGCTCCAAAAAACCGTATCCAGTCAGGTCTCATTACTGCGCCAAACGCTGCTTTCTCAATCCCATGCATCATCACATGCACCCGCTTCATCTCtcacactcgtacacacacacaatcacacacacaccctagcAACAAAAGGTAGATCTCTAAATGCACTGAGCACGCTTCTTTCCGTCctccacacaacacacacacacacacacacgcacacatcctGACTCATAACCGTTCTGGATTTCTTGTTagacgatttttttttttttttttaaattccagacgTGTTCCTGTGAAAAAAGCCACAAATAACAGCATAAGCGTACATGCTAACGGCTAATGCTGGTGTGACAGTTACAGACAACCAAAGCACAgctttcagatttaaaaaaaaaaaaaagaaaaggttgaGGTGGTTCACGCCCCTGTGGCTTTTTATTCATCGGAGGAGTTAGTTTTAGGTatagatgctttttttttttttttttttttttttttttcagttttacgCAAGTATTAGCCGATAATAGATGCGACGCTGACTTTTAAGACTTGCGAAAATGGCACGTATGTGATTATGatggaatgaaggaaggaaggaagtggtCATTCAGCATCATGTGCTTTCACgtcacacattaaaaaaacaaacaaacagcaaagtCAGATTGTAAAATACAGCAAATATGATCCAGCGCTCATGTGATCAGATAGGATAATCAGATATCATATCTGTGTATCCCAATGACCTCCAGATTCCTgtataaatgatgtaaattgCTCTTTGCTGCTTGAGTTTTTGTGCTTGCTCCAAGCTACTGACATCCaaacgtatatatatatatattttttttttccctttggaAGGCTTTAAGTACTattttagtttctttttctgtggttttatttCGGCTTTAACGGTCATCACATGCACATAGTCAGCTCATTTGAATGTGGTTTCTGTCAGTGATGTTGCACAGCAGACGGGACACGTTTCCTAACGGTTCTTTTAAGTTGTATGATTGTATTTATATGATTATGTCCGCACAAAACAAGAGGAGGCTCGTGACCggtggttaaaaaaatatatacacgcatatatatatatatatatatatatatatatatatatatatatatatatatatatcacgcGGATCATCATGAGAGCCGCCCTCGTCCCGTTTGAGCGTGTTCTCTCAGGTGtgcacactaaaaaaaaaaacccaaaaacccCTCCGCCTAAGGCAAACTACACTTCATCTGCTCCTCTTCTGCAACAccatgtgccaaaaaaaaaacccaaaacaaaaactCCTGATTGGACTGGCTGAAGAACTCTCAGTGAATCCCGTGAGTGTGGGATTGTTCCGCAAGGAAATGCACGCCTGTCGTTCAAGGAAGcagatgattttatttatttttattttagagaaTTGAGATCCTGTCCTTGTTTATCTTCATTCAATAAACACATTATCTTCTCAGA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165069 lncRNA upstream 14160 27288476 ~ 27295317 (+) False adam9
TU165045 lncRNA upstream 47736 27183021 ~ 27261741 (+) False fam160b2
TU164991 lncRNA upstream 200599 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA upstream 200599 27106929 ~ 27108878 (+) False G139686
TU164955 lncRNA upstream 414947 26891077 ~ 26894530 (+) True G139653
TU165078 lncRNA downstream 7445 27338993 ~ 27341506 (+) True G139756
TU165108 lncRNA downstream 97088 27428636 ~ 27489246 (+) False nr6a1a
TU165111 lncRNA downstream 108213 27439761 ~ 27490461 (+) False nr6a1a
TU165106 lncRNA downstream 122913 27454461 ~ 27489246 (+) False nr6a1a
TU165107 lncRNA downstream 136168 27467716 ~ 27489246 (+) False nr6a1a
XM_034306748.1 mRNA upstream 14140 27267175 ~ 27295337 (+) True adam9
XM_034306749.1 mRNA upstream 14140 27267175 ~ 27295337 (+) False adam9
XM_026945811.2 mRNA upstream 47737 27248587 ~ 27261740 (+) True fam160b2
XM_034306315.1 mRNA upstream 208727 27079096 ~ 27100750 (+) False ccdc92
XM_034306699.1 mRNA downstream 1823 27333371 ~ 27338168 (+) True ppiaa
XM_034306399.1 mRNA downstream 15833 27347381 ~ 27360862 (+) False LOC113546107
XM_034306398.1 mRNA downstream 15840 27347388 ~ 27360862 (+) True LOC113546107
XM_026945831.2 mRNA downstream 15841 27347389 ~ 27360862 (+) False LOC113546107
XM_026945720.2 mRNA downstream 31975 27363523 ~ 27370047 (+) True tti2
XR_003404685.2 other upstream 579646 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 742714 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 832018 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 832600 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 833127 26476278 ~ 26476350 (+) True trnaa-agc
TU165116 other downstream 97179 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 687923 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2156425 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2157001 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2157794 29489342 ~ 29489414 (+) True trnar-ucg_3

Expression Profile