RNA id: XM_034306484.1


Basic Information

Item Value
RNA id XM_034306484.1
length 2772
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC113526970
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9594790 ~ 9601084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACCAGACATGTATAGTTATATAGCACATTGTGCTGAGTTTAGAAAGAAGGCTGGTGATGTGCAGAAAACAATGCAAACTTTTCTGAGGACTCTATCCTTTTTCCAAGttctgataTGTGTGACAATGAAGACTTTCAAGGCTGAAAGTGTTTTTACTGGAACAGAAGGAGGCAGTGTGGATATCTCCTGTAAATACGCTGATGGATATCAGTATACACCCATGTACTTCTGTCGTGATCCATGCACTTCTTCTACTCATGTCTTAATTCGATCTGAGACGGCTGATATGGTCGACTCTAAGGGAAGATACACTGCACTAAACACTGTCTCTGCACGTCGCTTCTCTGTCACCATCAGACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGTTCTTTGACAAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGCAGTTCCGACTGTGTCTACACATGCTCCAGTGTCCAGGCAGGATCAAAGCCCTGAAGTTACACAGCTTCCCTGTGCTACAACAGCAATATCAAGTACTGCAGATAATTTCACCTCATATGAAGAAGCAACATCCACAACTCAAACTCAACATTCTTTAGACCCACATGCTCTTGTGATTCTTTACAGAAAGAAATccagcacacacatcacatCTTTGAAACCACCTGCTCCTGAAAACCAAATTTCACACCCACCACCTTATCAGGAGGACTTTTGCCATGTGTATGATGAGATGTTGGCTGTGTATAGTTTAGCTGGTCCAGCTACAGCAGATGATTCTTCAGCCACGTACAGCACCATTCAGCTCCCCGCTCAAGCAGATATAGCTCCTCACTGAAAACAGTTACAGCACCCTATATATGTGAGGTGCATCATACACAAAGGTAAAAACCATTCTGTGCATTTCAaaaaaataagcactctttGGGGGACACAAGTTTTCTTTTTAGCTGATTACTGTCTTATTTACACTTCTATATTCCACATATATTTAAACAACTAGCAAGAAGTGAGACTTGACATactatattttcattattaaagttgaaagtctacacttcggtCACatattgattgcttcatttcaaattcattgtggtggtgtacaggggcaaaattacaaaacttgtgtcactgtccaaatacgtatggacctgactatattaGCAGAAAAAATGACAGATTGACACATGGCCATTAACCCAGTCCTTTCGTGTGACAGTAAGGCTTATTTTATCAAGGATCAAAAACTGTTCCCTCATCCTTAGCCTCTTCTACATCAAACAACTTCTTAATTGTCTTGTACCACCTATTTCGATCTCCAGATCTCAGCTGGTCTGCTTCATCTTTGAGATACTTCCTTTTGGTTTGTCTCACAAGAACAGTTTACTGTTGCTGCAGAAGGCCTCTTGCCTCTCATAAATGGCGTTCTTTATATATCATCCATGGTTTGTCATGGGTCCTGACTTTACTTCTTTTGTATATTACTGTGTTGTCACGAATGTGTTGCATTGTGCTATAAAATGTCTACTTTCTGCTGTGGCTGTGATGTCTATATCATATACTTTGGCAAAGTCCTCCTGATTGAGACCCCAGGAACCGCTTTGACTTGGCAGTGCAGAGATGTCTCCTAAAACATTTAGATATTTGTTTGGACCAGGAACCTGCTTACCAGAAAATGGTCTGATAATCTGATCCTCCATGCAGAGGGAGATGTTCAACTTCTTTGTAGAGACCACTAATATTTGTGATGATAGAATCCAGTTGACTGACCCCACATGTTGAGTTCTTCACAACTTGTTTTAGACTGTATTGATAACACAAAGAACTGTACTTAAAAGTGTCTGTATCTCCTAGAATGACAATTCCAGGAAGTATCCACAGTATCATACTTAGGCACTGATTCAAGTATTCCGTAACTTCAGTGTCCATGAGTGACTCTCCTTGGAAGAGGAGGGGGATATAGATCACAGCAAATATCAGACAGTTCAAACCATGTGGGAGTCGTTAGGGTCTGAGCCATATCCACAGATACTCAAAGTGACTTCCTTTCAGCTCGACCAGTCACTTTTGTGGTATACTCCAATTGACGTACAGAGCATGTGTCTAATACATGAAAGGCTTCATAAATTGGATCTCAGTATATTATTCTCTGTGTCTGATGCGGGTTTAacacaactaaaaaaaatccttactaAGATTCTCTTAACCAATTAGTAGCATTGTGCAAGTTTTTCAGCTACGTTAGGTAGCTGAAGTCAGGTATTATAATCTTATAGATTAAGTAGCCATGGActcttatttttaaacaaaatatgacTGTATGTgatcagaattttaaaaaaattggcaAGCAACAGATGAAAGAATCTCACCCTGTCAGAGTAAATACAGTGATGTTTATATAAGTGTATGAAGAAACACTGACTTAAACAATAATTTCGTTTGTCTGCTTGTGGTCTTAAATTGAAAGTTAAGTCACAATTCCATTCAAATATCTTGGTCTGAACTGTACTGCAATTTCAGGTGTCTTCAATCAGATATCACATGAGCAAGCATCATTCACAAGTTAAACAAAACTTACAGTTGTGTTTCTTATTTTCCAGTATTGTTTAATCATTCGCACTTAATGATATACTTAATTACCTGCTTAATGATCAAAATGAGtacctgaataaataaatcattaaaagaaaaatggctAATATTACTGTGTTGATCTTAACTGAAAACCTGCATTCAATGACTACCAACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153354 lncRNA upstream 99060 9450562 ~ 9495730 (+) True G129849
TU153371 lncRNA upstream 123513 9462088 ~ 9471277 (+) False cebpb
TU153374 lncRNA upstream 123573 9462088 ~ 9471217 (+) False cebpb
TU153355 lncRNA upstream 140381 9453034 ~ 9454409 (+) True G129850
TU153327 lncRNA upstream 256840 9324708 ~ 9337950 (+) True G129831
TU153514 lncRNA downstream 585 9600195 ~ 9602532 (+) True G129971
TU153546 lncRNA downstream 61636 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 72457 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 116046 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 433740 10033350 ~ 10033565 (+) True G130231
XM_026929718.2 mRNA upstream 12050 9574382 ~ 9582740 (+) True LOC113536035
XM_026915443.2 mRNA upstream 21752 9547306 ~ 9573038 (+) True kdm5bb
XM_034306582.1 mRNA upstream 21752 9548026 ~ 9573038 (+) False kdm5bb
XM_034306581.1 mRNA upstream 21752 9549636 ~ 9573038 (+) False kdm5bb
XM_026927664.2 mRNA upstream 51511 9538833 ~ 9543279 (+) True tuba5
XM_034306492.1 mRNA downstream 211 9599821 ~ 9602488 (+) True LOC117597804
XM_034306493.1 mRNA downstream 211 9599821 ~ 9602488 (+) False LOC117597804
XM_034306488.1 mRNA downstream 11183 9610793 ~ 9614695 (+) False LOC117597803
XM_034306485.1 mRNA downstream 11183 9610793 ~ 9614694 (+) True LOC117597803
XM_034306489.1 mRNA downstream 11183 9610793 ~ 9614694 (+) False LOC117597803
TU152708 other upstream 1282134 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1623041 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2163793 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2167233 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2798714 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 758336 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 956908 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1270524 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2022692 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2022700 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile