RNA id: XM_034306494.1


Basic Information

Item Value
RNA id XM_034306494.1
length 1219
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC117597805
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9615604 ~ 9620956 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagaaactgttgcagagACTGATGGTGGTGACACGGATGCTCCTGTaacttctgccagatggcaggcgGTTTCAGTGGATATCTCCTGTAAATACGCTGATGGATATCAGTATACACCCATGTACTTCTGTCGTGATCCATGCACTTCTTCTACTCATGTCTTAATTCGATCTGAGAAGGCTGATATGGTCGTCTCTAAGGGAAGATACACTGCACTAAACACTGTCTCTGCACGTCGCTTCTCTGTCACCATCAGACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGGGCTCTGACAAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGCTCTTGTGATTGTCTACAGGAaaacctccaacacacacaccatttGTTGTTGTTTACTGCCTGCTCCTGAAAACCAAATTCCACATTCACCACCTTATCAGGAGGACATTCGCCATGTGTATGATGAGATGCTGGCTGTGTAAAGTTTAGCTGGTCCAGCTATAGGAGATGATTCTTCAGCCACGTACAGCACCATTCAGCTCCCCGCTCCAGTAGATAATGATTGCAGTCCATACTCTCTTGTAGCTCCTCACTAAAAACAGTTACAGCACCCTATATATGTGAGGTGTATCATACACAAAGGTAAAAACCATTCTGTGCATTTCAAGAAAATAAGGACTCTTGGGGACACAAGTTTTCTTTTTAGCTGATTACTATCTTATTTACACTTCTATATTCCTCACATATTTAAACAACTAACAAGACTTGACCTGACTTATTGTTCATTACAAGCATGTTAAAGATAAACCTGAACTTTCTAAAACATCCTGTGGCAAACTGACACTTGGGCATCTGCTCAGTACTTCTGGTGTGACTGTGAAGCTTATTTTATCATGCTGACTTGCAGCTCTTATGCAAACATGAGCATTTCATACATATGCAAATTGAATGCACACTAAGCTAAACCAAGAGCCTTACTGAAAATAGTGTTCACTACACGCTACACTTTACACAGGTGTCTAATACATAAAAGGCTGGGAACGATCTCAGTATATTATTCTCTGTGTCTGATGTGGGTTTAACAAAAAGTTATTAATAGTTCAATAGATGAATAGAAAGTGGCATAAAACAGACCTTTATATGTAGCCACTGGAGgtgttattattaaaatgtttcctTATCAACTGTTGCTACTTGCTTGCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153514 lncRNA upstream 13072 9600195 ~ 9602532 (+) True G129971
TU153354 lncRNA upstream 119874 9450562 ~ 9495730 (+) True G129849
TU153546 lncRNA downstream 40290 9661246 ~ 9664685 (+) False LOC113532719
TU153547 lncRNA downstream 51111 9672067 ~ 9672335 (+) True G129996
TU153572 lncRNA downstream 94700 9715656 ~ 9715868 (+) True G130021
TU153789 lncRNA downstream 412394 10033350 ~ 10033565 (+) True G130231
TU153848 lncRNA downstream 464605 10085561 ~ 10147134 (+) True G130285
XM_034306488.1 mRNA upstream 909 9610793 ~ 9614695 (+) False LOC117597803
XM_034306485.1 mRNA upstream 910 9610793 ~ 9614694 (+) True LOC117597803
XM_034306489.1 mRNA upstream 910 9610793 ~ 9614694 (+) False LOC117597803
XM_034306486.1 mRNA upstream 910 9610793 ~ 9614694 (+) False LOC117597803
XM_034306487.1 mRNA upstream 910 9610793 ~ 9614694 (+) False LOC117597803
XM_026913306.2 mRNA downstream 3344 9624300 ~ 9637023 (+) True rap1aa
XM_026914347.2 mRNA downstream 30915 9651871 ~ 9658559 (+) True ddx20
XM_026924266.2 mRNA downstream 39859 9660815 ~ 9665693 (+) True LOC113532719
XM_026922828.2 mRNA downstream 313336 9934292 ~ 9965096 (+) True cttnbp2nlb
XM_026919256.2 mRNA downstream 392384 10013340 ~ 10031188 (+) True wnt2bb
TU152708 other upstream 1302948 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 1643855 7968235 ~ 7971749 (+) True LOC113526371
TU151932 other upstream 2184607 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 2188047 7424023 ~ 7427557 (+) False mrps36
XR_004578571.1 other upstream 2819528 6756763 ~ 6796076 (+) False phf19
TU153960 other downstream 736990 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 935562 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 1249178 10870134 ~ 10874017 (+) False mrpl55
XR_003403321.2 other downstream 2001346 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 2001354 11622310 ~ 11633844 (+) True LOC113530800

Expression Profile