RNA id: XM_034306547.1


Basic Information

Item Value
RNA id XM_034306547.1
length 9018
RNA type mRNA
GC content 0.55
exon number 47
gene id ncor2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26889333 ~ 26989582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagcagcagcaggagcagcagcagcagcaggaggagcagaTTTTTCGGACATTTTGTGGATTTCTGCTTGGAATTGTGAGCAAAAAGTGGACAATGTGGGATCATATCAAGTCTCTGAACACGCCTGTGTGGGGATGAGTGGAGGAAAGAGTGgataaaaggaggaaaagagagaagagaagcggagagaggagaaaggagGATATCACTtattcacccacacacacacacacacacacacacacactccgaggACCGGGTGTAGGGGGGGGCAAAACCGACCAGGACCCTTCTCTACATGTGGATTAATTtcaaatttttacaaaaaaaaaaaaaaaaacaaaacaaacaacataaataacaaacaagCCTACTGGatacacacacctacagtcACACACCTAATACACAAGGTTGTTGTTGACGGTCAGGACTCGATTCCGAAGAATGGTCAGCGTGCATAGAgcggccacgcccacttcctgtGCGTAGAGGAAGTCTCGTCATCAGCATGTCCTCTCACCCGCAGCCGGTGCCTCAGAGCCGGAGAGCTGTGGACGCCCGACACCTGCCGAGTTCAGCCAGCCTTCCTCTGCCCATAGCCCGCGCTCacacgGATGTTGGAATAGTGAACTACAATGCTCGGGACTTCGGTTCCCATCTCTCCCATGGAGCTCTCGCCCAGTCTCACCGCCGCAGACCGTCCCTGCTTTCGGAGTTTCAGCCCGGGAACGAGAGagGCACAGAGCCCCACGTCCGATACGAGCACATATATCTACCCGAAGCCAACAGCCAATCGGAGGTGGAGTATGGCGAGATAAAGCGGCCTCGCCTGGAGATCGGGGCGGAGCCTCTAATGCGTCATCCGCCTCAGCGCCCGCCTCTGCCTCTGACTGGAGCCGAGGATGTCGTGAAGGAGCGTGGCGGCAGCAGCTCGATGGGGAAGATCGAGCCCATCTCTCCGGTGAGTCCAGCGGTGATGGAGGCTGACCTGGAGCTGGTGCCTACGCGCTTTTCTAAAGAGGAGCTCATCCAGAACATGGACCGCGTGGACCGAGAGATCACCATGGTGGAACAGCAGATCTGCAAACTGAGGAAGAAACAGcaACAGCTGGAGGAAGAGGCGGCGAAGCCCCAAGAGCCAGAGCGCAATATTTCTCCTCCACCCAGCGAAGCCAAACACCGCAGCCTTGTACAGATCATCTACGATGAGAAccggAAAAAAGCAGAGGAGGCTCATCGTATCCTAGAGGGACTGGGACCCCGAGTGGAACTGCCACTGTATAACCAGCCGTCTGATACGAAGCAGTACCACGAGAACATTAAAATAAATCAGGTGATGAGGAAGAAGCTCATTCTCTACTTCAAGAGGAGAAACCACGCTCGCAAGCAATGGgagcagaAGTTTTGTCAGCGCTATGACCAGCTGATGGAGGCTTGGGAGAAGAAGGTGGAGCGCATAGAGAACAACCCTCGGCGCAGGGCCAAAGAGAGCAAAGTGCGCGAGTACTACGAGAAACAGTTCCCCGAGATCCGCAAACAGAGGGAGCTGCAGGAACGCATGCAGAACAGGGTGGGTCAGCGTGGTGGTCTGGCCTCTGCAGCACGCAGCGAACACGAAGTGTCTGAGATCATAGATGGCATTTCAGAACaagagAACTCGGAGAAACAGATGCGTCAGTTGGCCGTGATCCCGCCGATGCTGTTCGACGCCGAGCAGCAGAGGATaaagttcattaacatgaacggTCTGATGGACGACCCCATGAAGATCtacaaagacagacaggtgaTGAACATGTGGAGCGACCAGGAGAAAGACACCTTCCGAGAGAAattTATCCAGCACCCTAAGAACTTTGGCCTGATAGCCTCCTACACCACACTTAagacTGTGGCAGAGTGCGTCCTCTTCTACTATCTGACAAAGAAGAACGAGAACTACAAGAACATCGTCCGCAGGAACAACCGCCGCAGGGGCCGCAGCCAGaataaccagcagcagcaacagcagcagcagcaacaacagcagcagcagcagcagcagcagcaacagcagcagcagcaacagcagcaacaggTGAACCGCAACAAccaggaggagaaagaggacaAGGAGgcagagaaggagggagagcgAGACGAGGACAAGAACGACGCAGATGACAAGGAGGATGGCATAAAAGATGACACGTCAGGAGAGGACGGTGAAGATAAAGATCCTCCTGTAGCCATTAAAGGACGTCGCACAGCCAACAGCCGTGGCCACCGAAAAGGCAGAATCACTCGCTCCATGGCCAACGAGCAGGAGGAAAGCAGCTCTCCTCCTCTCAGCGGGGAACTGGCAAACCTGGAGATGAACGAAAGCTCTCGCTGGACAGAAGAGGAGATGGAGACTGCCAAGAAAGGACTTCTCCAATATGGCCGCAACTGGTCGTCCATCGCCAAGCTGGTGGGCTCCAAGACCGTCTCACAGTGCAAGAACTTCTACTTCAACTACAAAAAGAGGCAGAAACTGGACGAGATCCTGCAGCAGCATAAAATGAAATCGgagcaggAGCGTAAGGCCAGGCGTAAAGGTAAAGCTCTGCAGAACGAGGAGACCAGCGCTCCCTCTGCTGCTGATGAagaggagatggagggatcCGGGGGCAGCGGCAACGAGGAGGAGGCTCAGGAGGATGGAGAGGGAGGCCCTAACCAGAGCTCAGATACAGAGAGCCTCCCGTCCCCGCACTCCTCAGAGAGCAGCAAGGTCAAAGATTCTAGCTCGGGCCGCTTTAAGTCTGCACCTAACACCACCTCTGCGTCGGCATCTTCCTCTGACAAAGATGCACCAGAGGAGGAGAAACCACAAGTCAAGTGCGAGCAGGGAGCCGTGAAGCAGGAAGAGCGGCCCGAGGGAACCGACGGAGCGAAGGAGGTGCAAGGGGAGGTCGAGGATAAGAAGCCTCCCACTCTGGAGGTGGAAGAAGTtaagagagaaggaaggaaaagagagagggagcatGGAGGACGAGACAGCGACTCCAGCGCTACCTGCAGCGCCGATGAGGTGGAGGAGACGGACAACACGGAGAAGAACAGaaTAACATCTCCTAGGCCGAGTCTGCTGAGTTATGCCCACGATGGAGTGATCTCAACTGCACTGCAGAAACCACTGGACCTCAAACAGCTCAAACAGAGAGCGGCCGCTATACCTCCCataATGCCGGACATTTCTGTAGCCGGTGCTGGCGTTTTGGGGAAGCAGCAGGTGATGCCCGACGCTCAGGCGCTCTACGAACAGCAGATCATCATGGCACACGAGTCCTCCCAAGGAGCCAAGCAGCAGCCTCCGCAGCCAATCAAATCGCAGCATTACCCCAGCAGCATGGCTGAGGCCGGTAGCCCACGGATCCTAGCCAGAACACCCACGCCctcggagagagagaaagaggAACTGGAGGGGGGGAAGGAAAGATGGCTACACACTCTGCTTCACGGATTACataAACCCCGAGCATTCTCTCCTCTTGCTGATGTGAAGAAAGATCCGGGCCCAGACCACATCAGAGCCATGGGTCTTGGTCGTCCTGTGATGTCACCGTACCAGCTTTCTTCCAGAGATTTGGCCAAGCTGAGCCATGAACAACTCCTGCACTACAACTCCTctcCTTCTCAGCAGGAGAGGCTGGCTGGTGTACGGCCGCAGCACATCCCCGATCCTCCTCCCCTCATTTCCTCGGCCAAACCAGGCGGCTCCATCACACAGGGTACTCCAGTGCAGATGCACAGCCCCGCCCACGGCTCCGAGCACGCCAAGATGACTCCAGGAGCTCTGCCTGTGTCCTGGACGGAGCAGCGGAAACTCTCCGGGTTCCCCGTGGTTAAACAAGAGCAGCTGTCTCCACGTGGCCCCGCCTCCTCTCAGGCTGAGAATCTGTCCACACATGCTATCGCTCATGAGAGCCTCGCTTCTCGCGggcCCATGCCAGCTGTACAGGGAGGAAGCATCACAAAGGGCCTTCCTGGCACGCGCATCCACCAAGATTCCTCCATAACATACCGTGGTGGTTCCATCActcagggcACCCCGGCAGAAGTGCTGTATAAGGGTACCATTACTCGTCTTATCGCAGAGGACAGCCCTAGCAGGGACAGATCCAGAGACGAAAACCAAGCCAAGGGACACGTTCTGTATGAGGGCATCAGTGGACACATCCTCTCCTATGAACGCGCTCTGAACCCAAAGGACGAAGGCAGGGGAGAGGTGTTAGGGCTGAAACGCTCTTACGACGTCATGGACGGTGGGGGCATCTCTCGAGTGCTGCCGTTACGGGACTCTCTGTCCACTGCTGAGGGTTTGATGTGTAGAGCAATGcctcaggagagagagagtcctcGTCCTCATCATATCCGCGGCTCTATCTCACAGGGTATCCCACGTCATGTAGAGTCCCAGGAAGAGTATTCACGACGAGAGCCGAAGCAGCTGAAGCGCGAGAGCTCTCCGTCTCCCCGCGGCCCTGACGCTATTAAGGGCCGCCCCCACGACAGCCTAGTGCCCACGGTTAAAGAGGGCGGACGCTCCATCCACCTCATCCCGCCGGAGGGTGTGCTGATGAGCAAAGCACCTAAAGAGGGCTCCATCACACAGGGCACGCCTCTCAAACTGGAGACCGCGGGTTCATCTAAACGCCACGACGTGCGCTCCATCATATCCAGCTCTCCTCGGCCGTACTCTGGTCTCCCACCTCATTTGGAGAGGGGCCACTACGACGAGCCGGGCCCCAAATCTCGGCCTAGCGCTGTGGTCAGCACCTCAAGCTCCCTGGTGCTGGGGGCAGAACAGGCGGGCAAAAGTCACCACAGCCCGGTGGGCTACGACGAGCACAAGAGAGCAGGATATGCGGCACCTTCACACCGAGGATCCCCGCTGGCCAGCAGAGACACGCCGCAGCGGCCACACGAAGGCTCTGCGAAGGTCCCTCAACAGGAGAGGAAGTCCACTCCCACTCCTCGGGAAATGAGCTCTACCAAGTCTCCGCTGCCTGTAGTGGGGGATCACGCTGCCTCTCTGGCCTCCTATGAGAGGCTGCTGCAGGGTCTGGGAGCCGATGTGTACCGAGGACAGATACCGCTGCCGTTCGACCCCGCCGCCCTGCCCCGGGGCATCCCTATAGATCCAGCTGCTTATTACCTGCCTCGACACCTGGCTCCCGCCCCTGGTTACCCCCACCCCTATCCCCCTTATCTAATCCGGGGCTTCCCTGACACAGCAGCCCTTgagaacagacacacactcttcaccgaCTACATCACCTCACAGCAGATGCACCAGTGGCCTGCAGCAGCTATGACACAGAGATCAGACCTACTGAGAGGGCCCCGAGACCCACCGCTCACTTTACCGTACTCACCTACAGCACgagGAGCGTCTGCATCACCAATGGACCGCATGAACTACCTCCCTGGCGCTCCAAACACTTTCCCCAGCCGTGCGTACACCACCTCACCGATCTCacctgTCGGAAGCTCACACATAAGCAAACTCCAGGGCACACCGACGTCATccgagagagagcgcgagagagagcgtgagcgcgaaagagagcgcgagagagaccgggagagagagcgagaccgAGAGAGGGAacgggagagagaaagagaacgagagcgggatagagagagggagagggagcgagagagggagagagagcgggatcgagacagagagagggagaagtcTCTCGGCCATGGCAATGTGGAGCACGCCCCCATCTGGAGACCCGGAGCAGCAGAGCAGACTGGGAGCAGCAGCTCCAGCTCGCGTCCTCCTTCCCTGCCTTACAGCCACCAGGTGTCCCCGATGAGCCCTCGGCCCCAGGACAGCCTCCAGCACAGACCCACTGTCCTGCACAACACCAGCTCGAAAAACCTGCAGAGTTCAGAGCACAGCAGCCCGTCTGTACTGAgGTCTGTGCCACAGAGTTCTTCACGTTACCCAAACTACAGCGGGCACCTCCAGAGAGCCAGCGAGGCCTATCCAGACTCGAGCGGGGTCAAAGAGCTGAGCCGGGAGCTGAGTAAGACCCAGAGTCGCGGAGTTCTGCCCAAACACCAGGAGCCCAAGTCCGAATCCAAGATGTCCAGCCCGAGCGGGGGCGGAGTTTACCCCTCGGCCTTCGCCCAGGCCCCCGGCGGCCATGTGGGGCTCACAGCAGGCCGTGGTCTTCCCATGATGGCTACCGAGAGTGGCATCATGAATAGGGATAAGACTCAGAACAAGGACCACGAGCTCCGTGCACTCGCTCAGCAGAAGGCTCTAGAGCAGcacagtgtgttttttattccaGAGGAGAGACTGTCTCCCAGCCAGCAGCCTCCATCCCCTGCTGTTAAAAGCTCCCAGAGAGTAGTGACCCTCGCCCAACACATCAGCGAGGTGATTAAGAAAGATTACATGCGTCAGTCACAGCAGGGGCAGGCAGGAGGCCAGCCTGTGTTTAGCTACCACAATTCCCCTGTGTTGGACCTCACTCGACCCCCAAGTGCCCCCCAGACGCCCTCGGAGCCGAGCGTCAGCAGCCGCTTTACCCCCGAGGGCTCCAACAGCGACAGAGACAGGATGAGAGACAGGTCTCCTCCTCAGAGTAAAGTGTCCCCAGTGAGTCTGCCCCCTGAGTGCATCGAGCCAGTCTCTCCACCAGGGGGCGTGTCCGAGCCGGAATCCCAGGCAGCAGCGTGTCCCAGCGAGCAAGCCGAGCAAGGGATGGGATCTCGCTCTCCCTCCAGCAGTTCCCAGCCACCTGCGTTCTTCAGCAAACTCACCGAGAACAACTCCGCCATCGTCAAGAGCAAGAAGGAGATGATTAAGAAGATGGTTGTGGGCAACGAGAATGACTTTAACTCGGGACAGCCCGGGACAGAGATCTTCAACATGCCTGCCTCTGCTACTGGAGggCCAGTGACCATGCGTAGCCAGCCTCCTCCAGACTCCAGTGGGAACACCATTGGCCTGGAGGCCATCATCCGCAAAGCTCTGATGGGGAAATATGACGAACAGGCGGACGAGCGCTCGCCCTCCAACTCCGGAccctctgctgctgctgctgatccACGCACTGAAGAGCCTTACTCACTGCCTGgtaAATCAAAGAGCAGCGGGCGCTCCAACGGCCGCAAGACAAAGTCTCCCGGTCCTGGACTGTCGGGAGGAGAGAGACCGTCCTCTGTGTCCTCCGTCCACTCCGAGGGAGACTGCAACCGCCGCACACCTCTCACCAACCGAGTGTGGGAGGACAGACCGTCATCTGCAGGCTCCACCCCATACCCCTGTAACCCCTTCACGATGATGCGTTTGCCCGGCTCGGTGATGTCCGGGCCCTCCCCGTCGCCCACGCAGCCCGCTGCAGGACCTCCACAGCCTCAGAGCCGAACCTGGGAAGAGGAACCCAAACCGCTGCTCTGCTCTCAGTACGAGACGCTGTCCGACAgcgagtgaacacacacacacacacacacacacacacacacctcctctatTCGCtcctttaaactttaaacaggGATGTGAatggatacacacacatgcacacacttagTGAAACACACTAGAGagcacatacacatgcaaactAATATGCATACCCTCATATTACTAATGCACTTCTCTtaagtacaacacacacacacacacacacacacacagatgtaccCTGGTGAAAATGGCTGCTCCAGAAGAGTACTCGTAAGCGTGTACACACCTGCACACCAACATTAGAGTGTGCCATCACTCCAAGACTGCTCATATTACAACGACaaatcactcttttttttttctttttcttttcctttcctggtGTCCTGGTCTTATCAGACTCGGGTATCACAGAGACTCCTCTCTCCATAGTACCGCTCAGGATCCTCACATTCTCACCTcttgctgacacacacacacacacacacacacacacacactcactatgcATTGCTGTTTTAAACCAATAATTTGGCTCCAAATGGAATGAACAAGTCGATCAGATTAGCTCGTTTGGTGTCTTTATTTCGCACTTGAGGGTTAATGTAGCTAAACAGTAAGGCTAGCTTCGAGCTGCTAGTGTTTATTCATTCGTATTGGTCATCTCAATCGTTTCTAACACACAGCTCCGCCTTAAACTTAAGGCCACGCCTCTTATCTGAGACTGATCCTTGCTACGTCCTGACTGTTAGCTGCTACGACTGTTTTTAGCTCTGcgtccgtttttttttttgtttgtttgtttttttttaaatacatatccTTGTGTCAAACCACTCCACAAAGCAGTTGATTGAGATGTGTAGCTTGAGTGATGCTAATCTGGTGGATATGCGCTTCCTTTAtttgctagctacattagcctgaACATATCTTGGCTCTAGTGTTTCAGTTTTGGCCCAAAATGGCTGCCGATGGCGTCGCTCGTTGCTTTTACAGACTCACAGTTTCACCACTTGAGCTTCTGAGGCACATTTTGAGGTACAGaggaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcgtttgTATACACTGATGCATGAATTCAGATTGAGAGAATGAACAAGCCAGTTCCAGTTTTCCTGTTCTGAAATACGTACATTCAGTCCAGAAACGCTCATGAagagtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgtgtgcgCGTTTTTCACTCTTTTCCATGGGCGTTAGTTTACAAGGtacataatgcatttttttaatgtcactgaTAACATtgcagtttctgtttttttttttaaacagcggTTTCAGACTCGTCTCTACtcgaacatttttttttttcatgaaagctgcgacgtgtttttttttgtgtgtgtgtgtgtttatcactaATTTGTTTGCGTCTCTTTTTATTAAAGCACTTGGCCAGCAGACGGTTCTTGTTGTCCCGTCATGGACGCTGattattcatttaatgttttttt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K06065 NCOR2, SMRT; nuclear receptor co-repressor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164826 lncRNA upstream 369851 26512892 ~ 26519482 (+) True G139551
TU164785 lncRNA upstream 465639 26400191 ~ 26423694 (+) True car15
TU164434 lncRNA upstream 853200 26032594 ~ 26036133 (+) True G139235
XR_004578613.1 lncRNA upstream 938884 25948849 ~ 25950449 (+) True LOC113546140
TU164350 lncRNA upstream 1074292 25810175 ~ 25815041 (+) True G139172
TU164991 lncRNA downstream 117347 27106929 ~ 27108878 (+) True G139686
TU164992 lncRNA downstream 117347 27106929 ~ 27108878 (+) False G139686
TU165045 lncRNA downstream 193439 27183021 ~ 27261741 (+) False fam160b2
TU165069 lncRNA downstream 298894 27288476 ~ 27295317 (+) False adam9
TU165078 lncRNA downstream 349411 27338993 ~ 27341506 (+) True G139756
XM_034306357.1 mRNA upstream 32350 26819957 ~ 26856983 (+) False ep400
XM_034306356.1 mRNA upstream 32350 26820047 ~ 26856983 (+) True ep400
XM_034306360.1 mRNA upstream 32350 26820047 ~ 26856983 (+) False ep400
XM_034306359.1 mRNA upstream 32350 26820047 ~ 26856983 (+) False ep400
XM_034306358.1 mRNA upstream 32350 26820047 ~ 26856983 (+) False ep400
XM_034306315.1 mRNA downstream 89514 27079096 ~ 27100750 (+) False ccdc92
XM_034306316.1 mRNA downstream 93084 27082666 ~ 27100750 (+) True ccdc92
XM_026945811.2 mRNA downstream 259005 27248587 ~ 27261740 (+) True fam160b2
XM_034306748.1 mRNA downstream 277593 27267175 ~ 27295337 (+) True adam9
XM_034306749.1 mRNA downstream 277593 27267175 ~ 27295337 (+) False adam9
XR_003404685.2 other upstream 159502 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 322570 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 411874 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 412456 26476805 ~ 26476877 (+) True trnaa-agc_1
trnaa-agc other upstream 412983 26476278 ~ 26476350 (+) True trnaa-agc
TU165116 other downstream 439145 27428727 ~ 27429477 (+) True G139781
XR_004578633.1 other downstream 1029889 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 2498391 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 2498967 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 2499760 29489342 ~ 29489414 (+) True trnar-ucg_3

Expression Profile