RNA id: XM_034306570.1


Basic Information

Item Value
RNA id XM_034306570.1
length 1078
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC117597813
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 216161 ~ 217382 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTTcaatctcttcctcttcttcctccaaacAGAGTCCGAGTAAAGACGACACAAACCTTGTGGCAAGTTCTCCACAGATGCATTTATCGAAAAGCAATGGAACACCTCGGCCTTTAAACAACAACTCCGATAAGACCAAGGGGGAGCCGACCCAGGGGGATAGGAagcaggagaggaaggaggTGATGAATGGGTCTACAGAAAGGAAGACCACGTCCTTGAGAAAAGCCCGATCTGAATCCTCCCTTTCCCTTTCCCCTTCCTCTTTCTCGTTGACTCCCCTGCATGTGGAACATCCGGACAGGGTGGAGCCccaaataaaaacctgtgaagtGAGGAACCATTGGGTTCCTACTAGACATCCTAACACCACTAGAAAGATTGCAGATTGGACACTGGAAGTAAAGAAACCAGTTTTGTTTATAGGGGACTCCAACCTGTCCAGAATTCCCTATTTTAGTGACGAAAATGTTCAGGTGGATAGTTACCCTGGAGCCAACTTTTTACATATAGCCAAGGTGTTACAAAAATTAACCCCTAATCCAAACACTCAAAAAGTCGTCCTATCATTAGGAATCAATAATAGAGAACAAACATTCGAaagtacaacaaaaaaacagttgcaAGAGCTGTGGAGAATTGCTGCAGTGGTTTTTCCCAATGCCACGATCTACACCCCATTATTAAACTACTCGGATATCCTACCTAGACGACAACAAGAAACTCTAACAAAACTGAACACTCATATACTGGCACATGGTAATCCATTGCAGGAACTTCACCCACTTAGGTTCAAGGTGAACCCGAGGGACCCTATCCACTGGACCACGGAAACGGCTTCgcaaaatgtttacatactggTTGGATCAGTTAAACTTTTAGGAATGGTGAAGTGcaataaaacagacaacaaaaagcACACCAACATCATTAACCTATCCAAAACGTTTTGTCTCACAGGTCCGCAGGAGGATTTACTCAGCAAGGGTCTCACCTTCATCCCGGCGCCATGCGATGCGGACTTGGGGAGCTGGGGAGGGATGTCCACGCTTACAATAGACAACTTAAAATTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578543.1 lncRNA upstream 6748 208161 ~ 209413 (+) True LOC117597786
TU146983 lncRNA upstream 15218 197931 ~ 200943 (+) True G124451
TU146962 lncRNA upstream 18963 161954 ~ 197198 (+) False G124432
TU146976 lncRNA upstream 34494 180416 ~ 181667 (+) True G124444
TU146975 lncRNA upstream 35042 180416 ~ 181119 (+) False G124444
TU147026 lncRNA downstream 124056 341438 ~ 341758 (+) True G124481
TU147051 lncRNA downstream 183533 400915 ~ 402096 (+) True G124499
TU147065 lncRNA downstream 218780 436162 ~ 436973 (+) True G124506
TU147071 lncRNA downstream 244130 461512 ~ 466459 (+) True G124511
TU147072 lncRNA downstream 246197 463579 ~ 464969 (+) True G124512
XM_034306289.1 mRNA upstream 195523 112 ~ 20638 (+) True ipo11
XM_034306571.1 mRNA downstream 44017 261399 ~ 264259 (+) True LOC117597814
XM_034306644.1 mRNA downstream 117521 334903 ~ 341086 (+) True fpgt
XM_034306641.1 mRNA downstream 125280 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 125280 342662 ~ 366781 (+) False tnni3k
XM_034306642.1 mRNA downstream 125280 342662 ~ 366781 (+) False tnni3k
TU146973 other upstream 37744 177662 ~ 178417 (+) True G124442
TU146916 other upstream 130078 70073 ~ 86083 (+) True G124403
TU146909 other upstream 165089 48978 ~ 51072 (+) True G124399
TU146892 other upstream 202756 12688 ~ 13405 (+) False G124387
TU147002 other downstream 55035 272417 ~ 330399 (+) True G124462
TU147050 other downstream 182374 399756 ~ 407434 (+) True G124498
TU147085 other downstream 289713 507095 ~ 508908 (+) False si:ch73-70k4.1
TU147120 other downstream 428584 645966 ~ 647953 (+) True G124541
TU147121 other downstream 428584 645966 ~ 647492 (+) False G124541

Expression Profile