RNA id: XM_034306604.1


Basic Information

Item Value
RNA id XM_034306604.1
length 2153
RNA type mRNA
GC content 0.43
exon number 3
gene id c8h1orf174
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7916766 ~ 7921741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAGGAAAAGCCCCTCCCCCTAGCCCCTCCCGCTCCCCCTCCCCAGTGTTTCCGCCCGAGCAGCGCCGAGTGGTCCGAGTTACCACCATGTAAACACTCCTCAGACCGTACTGATAATTATTTATCGAGCAGCGGCGactgtagaagaagaagaagaaacgtTGTTTCGCGGATTAAAGCTAGCGGAGGGAGACTGAACATTACGGCCGTGattaacacactgcagcagcagcagatggCCGGCGACAGCGGGGAGAGGAAACGGCTGCCGAAGAGACCTTCATCCGGCCACCGAGCGGAGAAAGCGAGCGGCAGCGGAACCGAGACGGACAGGATTCCGGCCAGACTCGTGAGCTGTGGGGATCGAGGGGGACGTAAGGAGCggagagggaaagaaaacagCGCGGGGAGAGCGAGCGCGTCGGCGCGCGCAAACCCGGAGAAGATGGAGGACGCGGAGTGCTGCGGATCCGCCGACAGGGCAGACCCCGGCCTCTTCTTCGATGAGGACAGCAACCACATTTTCCCAGTAGAGCAGTTCTTCGGAAACCTGGACGCAGTTCAGGACATTTCACGCAAATCTACTGGCACAGAGGGAATGAGCAGACGAGAGTACAGGAGGCGTCATTACTACGCCAAAGAGGACAGTGACGAGGAGCagacataacacacacacaagctgactTTAAAACTCTGACGCAACCATTGTATGTACTTTTATTGAAAATTTGTACAGTCATTTGTAATAATGGCagaaaaagtttttctttatgTACAGAAAAAAGTTTCCAAAAGAGCACTTGTGTGGGTTTATCTAATGTTAAAAACTATAATTTTGAAGTTGTAAAGAATTTTCTTTTGTAAGCAGCTCTGTGCAGAGTTTTAACTAATTTAATGtaacttcaaaaaaaatttttttttaaaggattttacTATTTCTATATGACATCCGCCTGTTTTTCCATCCACTCTCAGTTCTACCATCATCCTTAGTGCGCAATATATTACTATCAGTCAGTCTCATTTCAGGGATTATGATTGTAACAGTTGTAATCACAGTGAAGAAGGTTTTTGAGTATTAAACCAGCTtgagtttttacattttcagtgttGCAGCTACAATACAGTGACTCTAGGCCTTGATAAAGagcatattaaaaatattgcaaaaatatattAGCAGAGCTTAAAACAATGCCTCAGCTTCTTTTATAAAAAGAACTAAATGTAGTTTTGATTTTCGGGAGGTTTTTGTGTTGGTAAAGTATGTCTGAGTAGCACTGATTGTAAATCAAGAGCTTACACTTGTGAAAAAGTACAGGAGTACGTGGGATTGAAGTCTGAGATGAAGCTTTATGAAAGTTGAACTTGCATGGCACAGAAGCACAGTAGTGCTGCAGGAAGAGAAAGGTACATCAGAAGGTAGTTAATCtgtatttaattgaatttttttttttttaatgtgaaatacaTTGAAAATGAAGAGCTTGAAGAAACCCTGGGCCCTTCAGCATGGCTACATACattcactcacaaacacacacacacacacacatcctgagctcaggttactgtctgtgtggagtggattggcaactctaaattgcccctgggtgtaaacaagtgtatgaatgtgtgccTGAATGTTGCCCAGCGATGGACTAGTGTCCCgtccagggtatattcctgcttcatcccagtgttcccaggataggcccCAGAGCCACCACAaccctgcccaggataaagcacttactgaaggtgaatgaatatTATCCACAAGGCCAGTTTTATCATGTGCAGGTATAAACATGTTCATAACTTCCCCTGCCAAGAAAGACGCTTTTAAGCTACAACATTTACGTTTTGGTATTATATAATTCATTAGCCTGTCTGTACATAAAATAGCTTTATTATGAAGCACATAAGTTAAGAACATAATTGGTAGCTGCAGTCTTTTTATAAACAGACTGCTGTGTGACAAGACAACGTAATGTGGACAGGAGGTTCATTTTATACGTCATGTGATGTCAGTTAAGTGCCTCAGTCAGGAAAAATCATCGTGTTAATGTTTGTAAAGACTCTTAAATAACAGTTTGATGTTTTTTCTGCTTCTGTAATATTCTCCttgatcatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152183 lncRNA upstream 12383 7903500 ~ 7904383 (+) True G128823
TU152143 lncRNA upstream 55255 7856004 ~ 7861511 (+) True smim1
TU152139 lncRNA upstream 55255 7857854 ~ 7861511 (+) False smim1
TU152140 lncRNA upstream 55255 7857854 ~ 7861511 (+) False smim1
TU152125 lncRNA upstream 70609 7842533 ~ 7846157 (+) True G128777
TU152117 lncRNA downstream 5825 7927566 ~ 7929704 (+) False G128775
TU152119 lncRNA downstream 5825 7927566 ~ 7929704 (+) True G128775
XR_003402768.2 lncRNA downstream 46538 7968279 ~ 7970772 (+) False LOC113526371
TU152198 lncRNA downstream 50613 7972354 ~ 7998833 (+) True G128837
TU152220 lncRNA downstream 57903 7979644 ~ 7994612 (+) True G128851
XM_026928478.2 mRNA upstream 7044 7873393 ~ 7909722 (+) True cep104
XM_034306638.1 mRNA upstream 7044 7873393 ~ 7909722 (+) False cep104
XM_026928485.2 mRNA upstream 11251 7873393 ~ 7905515 (+) False cep104
XM_026916283.2 mRNA upstream 55196 7856511 ~ 7861570 (+) False smim1
XM_026916265.2 mRNA upstream 55196 7857703 ~ 7861570 (+) False smim1
XM_034306715.1 mRNA downstream 32982 7954723 ~ 7959217 (+) True si:dkey-20d21.12
XM_026916892.2 mRNA downstream 195836 8117577 ~ 8122886 (+) True LOC113528372
XM_026914400.2 mRNA downstream 377614 8299355 ~ 8301673 (+) True si:dkey-72l14.3
XM_026926795.2 mRNA downstream 473248 8394989 ~ 8402547 (+) True LOC113534163
XM_026912711.2 mRNA downstream 561342 8483083 ~ 8541426 (+) True ajap1
TU151932 other upstream 485769 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 489209 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1111456 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 1120690 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 3153775 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 46494 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 385423 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2436205 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2634777 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 2948393 10870134 ~ 10874017 (+) False mrpl55

Expression Profile