RNA id: XM_034306644.1


Basic Information

Item Value
RNA id XM_034306644.1
length 2467
RNA type mRNA
GC content 0.48
exon number 4
gene id fpgt
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 334903 ~ 341086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATCAGAGTTGTCGGAACAGCGgtggtaaaagaaaaaaaaacgtggaCGTAAGAAGGGCTTTTTATTTACGCCGATGAAGTTAGTAAAATTCAGATTATCAGATTATTTAAtagctaatttacaaataaaccaCGTAAAAATCTGTATAAACCCTGATTCTTATTCTAGTTATTGCTGCGTTCTCTGAATTTCTTGTTTGACTGTTAGCTCGCTGAGGTAATTTCTCACaatgacagagcaaacaaaaaatataaaacatacaaaaaacacacatttgtccAAATCCACCAAAGACAAACTGGATAAATTCAACAGAATGAGGGGTGCTGAGGTGAAATCTGGGGGGTTTTGGGACCTGGTGGTGATCACAGCCGTAGATGAAGATCAGAGATGCTGGTATGAAGTTCAGCTACAGGAGAAGATCCGCAGGAGCGAGCTTCCCCTCAGTGTTTATCGTGTGTTTGCAGATCCTCCAGGCCACAAGATCGgtaatGGAGGCTCGACATTGCACGTTCTGCAGCTCCTGAGTGATGAGTATGGAGAGACTTTATCCAGATTCAGAGTGCTCCTCATCCACGCTGgagggTGGAGTCAGCGTTTACCCCACACCAGCGCTCTGGGGAAGATCTTCATGGCTCTTCCACTGGGAGATCGTGTGTATCAGATGTTGGATCTGAAGCTGCTCATGTATGTGGACTTTCCTGCTCACATGAATCCTGGCGTGTTGGTCACATGTGCTGATGACGTCGAGCTCTACAGCGCCATCCAGAGTCTGAAGTTTAATAAACCTGGCTTCACCGCCCTCGCACACCCCTCCCCTCTGTCCATCGGCCAGTCACACGGCGTGTTTGTTCTCGAACCCGGAGATGAGCCGCCTGTCCAAGATGTGGAATATAGAACCTGTCTCCGGTTCCTGCACAAACCCAGTGTGGAAGTAATGCACAGGAGCGGCGCTGTGTTCAGGAAGCACGATGATGAAGTGGTCTACACAGACAGCACGTACTACATCAGTCATGACACCGTGGAGACGCTGCTGGACCTGTTCCGAGAAATTGGACCTCTGAGGTGTGAGATTGACGCCTACGGAGATTTTCTGCAGAGTTTAGGAACCAGCGCTACGGCCGACTACACCAACAACACTGAGAACGTgatgaagaaggagaaagaTCTGGTGGAGGTCAGAAAGAAGATCTTCCAGCATCTCGGAGGAACACAGTTGAATGTTATAATCCTCAACGAGTCAAAATTCTACCACCTGGGCACCATGGAAGAGTACCTGTTCCACCTCACTGTAGATCTGTGTCTACGAGAGGAACTCGGCCTCCAGACCATCACCTTCAGCTCCTGTCCTCTGGATGTGTGTGAGAATAAAAACACGTGTGTCATACAGAGCATCGTCCACCCAAGTGCgcgagtgtgtgagagcagcGTGGTGGAGTTCTCCCGGCTGGAGAAGGGAGTCGAGGTGGGCCAGAGCTCCATCATCAGTAGCTGCTGGGTGGACAGGGGTCTCTCCATCCCCTCCAGCACCTTCATGCACTCGTTTGCCGTGTCTACGGATGGCAGGACGCAGTTCGTCACTGTGGCGTTTAGTGTTCAGGACGATCTGAAGAAGACGGTGCCCAGCTGCGCAGACGTGAACAGGTTGGAGGTGTTTGGTGTTTCTgtgggagagtgtgtgagcCGCTGGGGACTGAGCGTGGGGGACGTCAGGCTCGCAGGAGACGTGTCTGTGTGTAACCTTTGGACTTGCTGCATGTTCCCTGTGTGTGAGGACATGAAGACCTCGTTCTCCACCACGCTGCAGATGGTCCGAGCAGCTCACGGAGATGGAGTTGTAAgtttacagaaatacacactgCTCTCACTGCAGGACATCCTCCACCACAAAGACCTGGAGACCATGCTGAAGTTCAGAAACGATCTGTACGAGGAAATTCTACGGGAAAAACGAGATGCAACACATCAGGAATAACGATCTCTGGGAGAAATATCGATATCCAGCTAAATGGAACATGTTGCATTTTAGGCTGAATTTTAGAAATTTGATGCCTCAACATTATAAGAACATAAACATGAgaattttatattgatttaagTCTTGATGAAAGGTAGACAGAGTGCACGTGACTTCCTGTTGTCAGGGAGTGGTCGAGGTGGTGGACTATGGTGCTAATGTGGATGATGGAATAGAGACCTGTGGATGTCCTACAATCTCATCATGTCCATGATCTCCTCACGTATATGATTTCCTCATGTCCACAATCTCATCACGTATACGAGCTCCTCACGTCCACGATCTCCTCACTTCCACAATCACCTCACAGGGTTCTGATTCTCTTTCTCCTCACACTGACTCTAAGCCTGTTCACTGTGAACGGGTTTTAAAGCTCTGATGATGTGTTTAAATCTGCTCTGATTCTCTCTAcattgtaaaaattaaaaaataaaattctgttctgttc

Function

GO: NA

KEGG:

id description
K00976 FPGT; fucose-1-phosphate guanylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146989 lncRNA upstream 104035 207271 ~ 230868 (+) True G124453
XR_004578543.1 lncRNA upstream 125490 208161 ~ 209413 (+) True LOC117597786
TU146983 lncRNA upstream 133960 197931 ~ 200943 (+) True G124451
TU146976 lncRNA upstream 153236 180416 ~ 181667 (+) True G124444
TU146975 lncRNA upstream 153784 180416 ~ 181119 (+) False G124444
TU147026 lncRNA downstream 352 341438 ~ 341758 (+) True G124481
TU147051 lncRNA downstream 59829 400915 ~ 402096 (+) True G124499
TU147065 lncRNA downstream 95076 436162 ~ 436973 (+) True G124506
TU147071 lncRNA downstream 120426 461512 ~ 466459 (+) True G124511
TU147072 lncRNA downstream 122493 463579 ~ 464969 (+) True G124512
XM_034306571.1 mRNA upstream 70644 261399 ~ 264259 (+) True LOC117597814
XM_034306570.1 mRNA upstream 117521 216161 ~ 217382 (+) True LOC117597813
XM_034306289.1 mRNA upstream 314265 112 ~ 20638 (+) True ipo11
XM_034306641.1 mRNA downstream 1576 342662 ~ 366781 (+) True tnni3k
XM_034306643.1 mRNA downstream 1576 342662 ~ 366781 (+) False tnni3k
XM_034306642.1 mRNA downstream 1576 342662 ~ 366781 (+) False tnni3k
XM_034306275.1 mRNA downstream 69903 410989 ~ 456088 (+) True prkcz
XM_034306306.1 mRNA downstream 126675 467761 ~ 478047 (+) True LOC113541233
TU147002 other upstream 4504 272417 ~ 330399 (+) True G124462
TU146973 other upstream 156486 177662 ~ 178417 (+) True G124442
TU146916 other upstream 248820 70073 ~ 86083 (+) True G124403
TU146909 other upstream 283831 48978 ~ 51072 (+) True G124399
TU146892 other upstream 321498 12688 ~ 13405 (+) False G124387
TU147050 other downstream 58670 399756 ~ 407434 (+) True G124498
TU147085 other downstream 166009 507095 ~ 508908 (+) False si:ch73-70k4.1
TU147120 other downstream 304880 645966 ~ 647953 (+) True G124541
TU147121 other downstream 304880 645966 ~ 647492 (+) False G124541
TU147123 other downstream 304880 645966 ~ 647492 (+) False G124541

Expression Profile