RNA id: XM_034306659.1


Basic Information

Item Value
RNA id XM_034306659.1
length 736
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC117597828
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1257443 ~ 1263654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTcagTTTGGCTTCTGCACGTCGCCAGATCAGAATGTACAGCACCGTGTTTCTTCTCCTGATTTTTGcTCTCAGCTCTGTTCCTGTTGAAGCGATTGATACGTCTCTCCTGGCTGAACAGCTCTCACacTGTATAGTTGAGGTCTGCTCCCTTGAGATGTCTTTCTGCCATCGACACTATGGAGTGCTGCAGATGGACGACTTCAAAGAATGTATTAAGGAGCTTTGTACAGAGGAGATGAAAGTGTGTCTGGACTTGATTATGGCTGAAAGGATCGGAGACACGGGTGTGGAGGTGATTCGAGATTCATTTTTGCACTGCTTCAGACACTGTGGATTTCAGAACCAAACCAAATTCACAGGTTGCTTCCTGGAAGCGCTGGTGGATAAAACACAGCCGTATATCTCCATGGTGGCTGCAGGGTCGAGCGATCcagATTTCCTGTGGTGTTGGTTGAGCCGAGGCCTGGGAGCGGTGAAGAGCTGTTTCCATCACTACAGCGAGCTCTCCTACACTGTCATACACAACATTGTGAGTGAATGTGTCATTAACCAAGaatgcGTTACATGTTTCATGAAGGTGTATACCAGCGGGAACAAAAAATGCCTGCAGATGTTCATGCAGCTTTTTGGTTCGACCCCTACTCTGCAGATACGGGCTAAAGGATTTTTCATCTGCAGCATCAACGAGATGATTTCATTAACAGCAACATGTTAAAGCGGAAGTGAATTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147673 lncRNA upstream 28387 1228289 ~ 1229056 (+) True G124947
TU147646 lncRNA upstream 55517 1191075 ~ 1201926 (+) True doc2d
TU147647 lncRNA upstream 55517 1194061 ~ 1201926 (+) False doc2d
TU147640 lncRNA upstream 143059 1113054 ~ 1114384 (+) True G124918
TU147613 lncRNA upstream 192363 1064601 ~ 1065080 (+) True G124895
TU147775 lncRNA downstream 42066 1305720 ~ 1306145 (+) True G125031
TU147817 lncRNA downstream 77232 1340886 ~ 1343920 (+) True G125061
TU147861 lncRNA downstream 215653 1479307 ~ 1503724 (+) True G125094
TU147856 lncRNA downstream 241372 1505026 ~ 1507275 (+) True G125089
TU147866 lncRNA downstream 280182 1543836 ~ 1592893 (+) False G125098
XM_034306658.1 mRNA upstream 1508 1246530 ~ 1255935 (+) True LOC113535335
XM_026928160.2 mRNA upstream 56925 1155413 ~ 1200518 (+) False doc2d
XM_034306586.1 mRNA upstream 145376 1103715 ~ 1112067 (+) True lonrf1l
XM_026911599.2 mRNA upstream 262658 965498 ~ 994785 (+) True jak3
XM_034306819.1 mRNA upstream 296444 947768 ~ 960999 (+) False slc5a5
XM_034306739.1 mRNA downstream 211447 1475101 ~ 1501389 (+) True cep350
XM_034306741.1 mRNA downstream 211447 1475101 ~ 1501389 (+) False cep350
XM_034306740.1 mRNA downstream 211447 1475101 ~ 1501389 (+) False cep350
XM_034306743.1 mRNA downstream 211447 1475101 ~ 1501389 (+) False cep350
XM_034306742.1 mRNA downstream 211447 1475101 ~ 1501389 (+) False cep350
TU147636 other upstream 151156 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 440786 777964 ~ 816657 (+) False dennd2da
TU147173 other upstream 440786 792519 ~ 816657 (+) False dennd2da
TU147174 other upstream 453640 780019 ~ 803803 (+) False dennd2da
TU147157 other upstream 551586 704685 ~ 705857 (+) False G124565
TU147818 other downstream 80682 1344336 ~ 1346585 (+) True G125062
TU147915 other downstream 539843 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 613387 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 952448 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2831615 4095269 ~ 4101689 (+) False si:ch73-233m11.2

Expression Profile