RNA id: XM_034306684.1


Basic Information

Item Value
RNA id XM_034306684.1
length 3696
RNA type mRNA
GC content 0.43
exon number 14
gene id stk38a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12076511 ~ 12096739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCAAACTCCCTCTTGTAACTTAAGAGTCAGACTCTTATTTTGGAGACTCGACCTGAAGCAGCGACCCGGAAGAAGGAAATAATGATCAGTGTCTACAAGTAGACTGCATTCAGTCTGAGGTCGAGTAGAAGGTAACCATGGCAATGACGGGTCAGACGTCCTGTTCCTCCATGAGCAACCACACCAAGGAGCGGGTCACGTTGGCCAAAGTGACCCTGGAGAACTTCTACAGCAACCTGATCTCCCAGCACGAGGAGAGGGAGATGAGgcagcaGAAGTTGGAGAAGGTGATGGATCAAGAGGGACTAGCTGATGAAGAGAAGCGTATTCGGCGCTCTCAGCATGCAAGGAAGGAGACAGAGTTTCTGCGGCTCAAACGAACCCGCCTCGGATTGGATGACTTCGAGTCACTCAAAGTGATCGGCCGTGGTGCTTTCGGAGAGGTACGTCTGGTTCAGAAGAAAGACACAGGCCATGTGTATGCCATGAAGATCTTGCGCAAAGCTGATATGCTTGAGAAGGAGCAGGTTGGTCATATACGGGCTGAAAGGGACATTCTGGTGGAGGCGGACAGTCTGTGGGTTGTGAAGATGTTCTACAGCTTTCAGGACAAGATGAACCTCTACCTCATAATGGAGTTCCTACCTGGAGGAGACATGATGACTCTGTTGATGAAGAAGGACACTCTGACTGAGGAGGCTACGCAGTTTTACATCGCTGAGACGGTGCTAGCCATCGACTCCATCCACCAGCTGGGTTTCATCCACAGAGATATTAAACCTGACAACCTGCTACTGGATTCAAAGggCCATGTGAAGCTGTCTGATTTTGGCTTGTGTACGGGCCTTAAGAAGGCTCACAGGACAGAATTCTACAGAAACCTCAACCACAGCCTGCCTAGTGATTTTAcattcCAAAACATGAACTcgaaaagaaaagcagagacATGGAAGAGAAACCGGAGACAGCTGGCCTTCTCCACTGTCGGAACCCCTGACTACATCGCTCCTGAAGTATTTCTGCAGAACGGATACAATAAGCTCTGTGATTGGTGGAGCCTGGGGGTCATCATGTACGAGATGCTTATAGgttaCCCACCTTTCTGCTCAGAGACTCCTCAGGAGACGTACAGGAAGGTGATGAATTGGCGAGAAACGCTGACTTTCCCCCCAGAAGTTCCCATTTCCGAGAAGGCAAAGGATCTTATTCTCAGGTTCTGCTGTGAGAGTGAAAACAGGATTGGTGCTGCTGGAGTTGAAGAGATCAAATCGAATCCTTTCTTTGAAGGGGTGGACTACGACCATATCAGGGAGAGACCTGCTGCCATTCCAATCGAGATTAAAAGCATTGACGACACCTCAAACTTCGACGAGTTTCCAGATTCAGACATCCTCCAACCAACATCGTCTGTAGTGTCCAACCACTGTGAAGCTGATTTAAAGAGCAAAGACTGGGTCTTCATTAACTACACATACAAGCGCTTTGAGGGCCTGACCGCCCGGGGGGCCATTCCCTCCTATATGAAATCAGGGAAGAGATAAACACAGAACCCTGCTGGAGCTTGTGTTTGTCCTTTAAGGAGCCTTTTTTCCATTGCTTCTCATCACTGCGGATTGGTGGACTTCTCCAGACTtgtctgtttcctgttttgggCCACGCTGTGATGCATTCATGGTAGTGGACTCCTCCTCTTCCAGCACTTGTcctacaatgtttttttttttttacccaagcTTCTTTAGTAGAAGCTGCTAAAGCTATTTCTAGTCATCTGTTTTGGCTAGGAATGAAAAATTTGGGGCTAACACCTTTCAAATTCTGTTTTATCCCCATAATAGAGAAATGTTCCTTTTgacttaattaataatttatttagaaGACTAGAATGTGGCCAGTCCACTTTCTACCAGGGATTGCTTTTAGTTAGCGTAATTTACCATCGAAGAATTCTGCTCAGTTATCTGCTGTAGAAATTTGAAGTATACACATtttcagtaaacaaaaataagaaatggaCTCTTTGCAACGTTTTAAAAGTCCAAGAATTTGGACGCATTtgattttttatcttttttttttttttttattattattttttaaatataatctttCACAGTGCTTGCCATCACATACTTCACCTTACAGGAGATGGCAAAATGCAAGAGgcttctctttttgtttatgCAAACAATTTTCAGTGTTTGAAAGCCTAATATAATGTTTGTGAATCTGCCTACAGGGACAAACATTGCCTTAAATTTGGATACTAGACGAATGTTCCAGTAATCACTCGTTACACCAGCAAAATGTCCCTCTTCTAGACCTGCACACTGAAACAAAgttttttcctctgtttattttctttacagtaTACCAGCCAGTGATAATGACCAAGTGACATTTTGTAGACCAGCTTATTTATCGTGATTCTTTCAACTGCAGCTGTAGCTTTACCTTGTAATTTTACATTTGCTGGATGTTCATGCTCGCACTAAATTTGAAGCTGTTTTCCTTAAAAGGGCTCGCTTGTTCATGTTTACCTTGTTCAGTTTGGGAACAGAGCATGAGTCGGATGAGCGTTGCGGTTCAGTGTGctgaatttgtttatttggttATATACTCGGCAGTCTTCCATGTTGATACTGGGCTGAAAAAGCATGTTAATAGAAAAGCAATATTTTACCAAAGACTTGTTACTTTTAGCAGCTGATGCACCCTTGTTATGCCTTCAAGAAGCTTGATTTGTACTCGAAATTGAGTTTTCTACCTTGTAGGTTAGCGCATCTTGTAGAGTAGTGGCGAAAAAAATAGACTAGTAAAATTATTTATCCTGGGACAGTAGCTGTCTATTGTCATCATTCCAGTATGGCTAGTAGTAGTTGCACTATTGTATAGATAACTCGCGCATCGTGAAATAAGGAACGTTTGAGGGAGTCCGCAAACATTGTATGACTCGGATAGGTCTTGCTCGGTCGGATTTCAATAGGTTCCTTCATCAGCATCATGTTAGAACGGAATCCTGTTCTCGAGAAGCTCAGCTTTTTGCGTCTTTACACTGTCCTGCTGTTGCAGGTAATGCTAATCAAATCTAGATTTAGCTTCGACTCAGCTGGACTCGAAGAACAGATCCTATTAGAGGTAATTGTACTTTCGGTCAGAACGCCTAGCACTATTCTGCTCGATTGTGACTATTGATTTGTTCCATCTGACTGGAGCAGGACGCAGTAAGTTTTCTTGTTTTGCAATACAAAATGCTGTCGGTTAAGTCAATAACTATCCGCATGGCCTCACGAATCCAAAAATGCTGTTGACGAAAAGAAAAAGCACGATTGTGAGATTTTCCAAAATGCTgtagtttttatatttcaggAGCTGTACAAGGGAGCACTGCGTTTTGTAAATTAGAGCATTATTTCACTGATCCCGTAATGGGTCCGTTCTGCTCGCATACTTTTGCATGAGTGCTGCTGGAATGTTGGATGATGATCTGAATGGCACGGAGTAAGTGTTTCATTACTTTTAAACTCTATTCTTCTTctattgttgtgtgtttggcCCTCTGTTCCAGCACTGCGCAGTTTATTACTTATGAATGAAGCATTCCTTCTCATAAACAGTTTGTCAGTGAGAACATGCTTGATCAAATTATACACATAACACCCATTTGACTGCtagaactgtttttaaaaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08790 STK38, NDR; serine/threonine kinase 38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154976 lncRNA upstream 81711 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 83472 11992819 ~ 11993039 (+) False foxp3a
TU154974 lncRNA upstream 88086 11981765 ~ 11988425 (+) False foxp3a
TU154767 lncRNA upstream 358626 11716832 ~ 11717885 (+) True G131061
TU154744 lncRNA upstream 386837 11677903 ~ 11689674 (+) False uck2a
TU155067 lncRNA downstream 120265 12217004 ~ 12217214 (+) True G131279
TU155070 lncRNA downstream 129413 12226152 ~ 12226362 (+) True G131282
TU155063 lncRNA downstream 131475 12228214 ~ 12228615 (+) False kcnq2a
XR_004578623.1 lncRNA downstream 423155 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 423155 12519894 ~ 12533258 (+) False LOC117597859
XM_026916956.2 mRNA upstream 43019 12010073 ~ 12033492 (+) True sema3ga
XM_026919551.2 mRNA upstream 75741 11996043 ~ 12000770 (+) True tspy
XM_026919590.2 mRNA upstream 80659 11981792 ~ 11995852 (+) False foxp3a
XM_026915790.2 mRNA downstream 6481 12103220 ~ 12187629 (+) True prex1
XM_034306617.1 mRNA downstream 33616 12130355 ~ 12187629 (+) False prex1
XM_026917891.2 mRNA downstream 99854 12196593 ~ 12230001 (+) True kcnq2a
XM_034306707.1 mRNA downstream 99854 12196593 ~ 12230001 (+) False kcnq2a
XM_026917905.2 mRNA downstream 99854 12196593 ~ 12230001 (+) False kcnq2a
TU154763 other upstream 365966 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 367079 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 367079 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 368550 11705655 ~ 11707961 (+) False porcn
XR_003403367.2 other upstream 442667 11622310 ~ 11633844 (+) False LOC113530800
trnad-guc_1 other downstream 285260 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 965197 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 967311 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1272809 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1608517 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile