RNA id: XM_034306686.1


Basic Information

Item Value
RNA id XM_034306686.1
length 7054
RNA type mRNA
GC content 0.54
exon number 40
gene id cabin1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24954083 ~ 25013114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATGCGGCGCGCGTGCGTCCTATCAGCCAATCAAATTTCTCAATATTGGTTCCAGAAACTGCGTTATAGCAAAGAGAAGCTCGCGCATCTCTGAGACGGAGCAGACAGTGGTGATGCTCAACGACACATAAAAGAAGATGATCCGGATTGCTGCTCTTAACGCAGCCTCTGAGACTGCAGATGAGCATGAGGATCCCTTTAGAAGTACAAAACCGAGTCAGACCAAGGAGGCTCAGGAAGCAGAGGCATTTGCGCTGTACCACAGAGCTCTCGATCTGCAGAAGCATGACAAGTTCGAGGAGTCGGCCAAAGCCTATCATGAACTCCTCAAGACGCCGCTGCTTAAAGAGGCGGTGGCTTCTGAAGATGAGAAGGTTGGGCTGAAGCACCCGGGACTGATGCTGAAATACTCCACTTATAAAAACCTGGCCAGCCTGGCTGTGCTGAAAGATGACCTGGATACAGCTACAGACTTCTATGTGGAGGCTGTCATGCTGGACTCCACAGATGTGAACATGTGGTATAAGCTGGGTCAGGTGGCTCTGAGGAGAGTGAGCATCCCACTGGCTCGTCATGCCTTCGAGGTGGGACTGCGCTGTAACCCCGACCACTGGCCGTGCCTCGACAGCCTCATCACTGTCCTGTACACGCTCAGTGACTACAGCTGTTGCCTGTACTACATCTGCAAGGCTCTGGAGAAGGATATAGGCTACACTAAAGGCTGGGTGCTGAAGGAGAAGATCTTTGAGGAGCAGCCCTGCCTCAGACGAGACTCCATGAAGTTGTTCTCAAAACTCGATATGACCATGCACTACAGTGATGCAGACGAGGAGGAATCTCACAGTATTGTAGAGGAGGCGTTGGAGCTAAGGAGACAGAGGCAGGCGAAACTGTCACGACCTCCTCTGCAAGACCTGCAGCTGGTGGAGCCCATCAAACGCTTCACTTGGAAGAACGTAGGCGAGAGCTTCCTGGCCATGTACAAACACCAGAACGAGTGCCTGGTTCCACGACCCGACTTCGGTCGCCGAATTGACCTCACCATGTACCGTGATCCAGACTCCGTCCTCCAGACGCCTTCAGATGCCTCCCAAGTTCAAATAGCCCCAGCCACAGAGTCTCCCCAGTCCTCCACCTCTGCTCCAGCACCTGAGCCTCTTCCTCCACCTCACGCAGACTCCAGCAGCCCCAGTGCCAGCCAATCCATGCCCTCTGAGTGCCCTCTTCAGCCACAGGCtcaaagcagcagcagcaactcAGGACAGCTACAAGTGAGCCAGAGCTCCTTGGAGGTTGGCACTGCTGCTCCAAgcactactgctgctgctgttttgaATGGTACTActacttctcctcctcctcctgctactactactactactactactgctgctactactgctgctgctgctgctgctagtTCTGCTGCACCCCCTGGTGTTCTTGACTCGCCTCTGAATGATAAAGTGAAGAAGGCCCCCAAGAGGAAGAGAACGATGGAGGACTGTGGCGAGACGGCCAAGAGGAGATCTGCACGTGTTCGCAACACCAAAAgcaagaaggaagaaaagatcGATTTCCAAGAGCTCCTGCTTAAATTTCTACCACCACGGCTGAAGAAGTTTGATgttgatgaggatgaggaaagcCTCAGTAACATGGACACACAGTGTGAGGCGAAACCCAGCTCCAAGCTCAACCAGGGCACTGAATCGAACCTCTCTGACTACATCAGCTCAGCAGAGAAAGAGCATGAGGAAGTGCACTCCTTCCTGCTAGCTAACATGGAGAATGGTGGCATCCTGGAACTCCTCATGCGCTATTTGAAGGCAATAGGTCAGAAGTTTCTGGAAGAGTGGCCCCCCGGACTGAGCGGAGTGGTGATGGAGATCTACAACTGCTGGAGGCGACATAGTGCGGGCCTGCCCAATCCACTGCTCCGAGATTCCAACAACCGGCACAtcaaggagatgatgatgatgagtttgTCTTGTATGGAAATGCAATTGGAACAGTGGGTCCTCACTAAGGGAAAGAACACGTCTCAGAGGAGGAGTATGTCAGGTCACGGGGGTGATCATGGTGAGCTGGACAGCCAGGAGAGCCGCTTCCTGACTGATCTGTACATGCTGATCATGGCCTCTTCGCAGGCAGATGTGTTCGAGAGAGACTGGCTGTCATTCGCAGTCAGAGTGCACTGGCTCAAAGCTCGGCATCTCGCTTTTCAGGGTGATATGGAAGAGGCACTGGAGcgttatgatgtgtgtgtagggcTACTGAAGAGCCAGCCTCAGACCAGTGATGGAGACAAGCTCTCCATCCACATGCCTAACCTTTGTGTGGATTTAACCATTTCTGTAGAGGAGATTGAGAAGAAGCTGAAGTCTCTGGAGAGGTGCCAGTCACTGGAGGAGATTCAGAGGCTGTTTGAGACCGGCGACTACCAGTCCGTGGTGAGATTACTCCAACCCACGCTGAGCTGCGGGTCCAGCTCATCACGGCCTAAGCCATTGGAGTACATCAGCTCAGCGCCTGAGAGACCAGcacagctgctgctgcttcagAACTCCTTGCTTCACATGAAGGATTATGCTCAGTGTCTGGAGAGTACTGAGGTGGTGCTGAATGAGGCCATGCAGCACATAAACTCCATGTTACCCAGCAGTCCCTCTGCTAAGGAGGAGTGGGTAGCCACAGTGACAGCCATGCTGCGGGGAATCGAACAGTGCATCACGGAACAGCCGCAACTTCTCACCAGCACACCACCAACCACCAATCTACCTCGCCTCGCCAACAACCTCGTacagCTAATAGCCTGCAGCATGGTGTTGCCTGACGACCCCAAGGAGCCTCACTTCTCCTCCATGCTGCCGTGGATGCTGCTCTACCACCTGCTCAAGCCAGACGAGGCAGAGCTTGACTGCACACTCCGCCAGCACCAAgccgatgatgatgatgatgAAGACGACAACCCCCTGTTGCCTTCGTCTCTCATGTTGTTAAACACTGCACATGAGTACCTGGGCCGCCGCTCCTGGTGCTGCAACTCAGATGGCGCTCTGCTCAAGTTTTTTGTGCGTGTACTGCAGCAGAAGCTAGCTGAAGCAGATGCACTGCCTTATAAGGAGGATCTGGAGACGGCGCTGGAGCAGTGCTTCTACTGCCTGTACTCCTACCCAAGCAAGAAGAGCAAAGCACGCTACCTGGAGGAGCACTCTGCACCACAGGTGGAGCTGCAGTGGAGCGACGCTCTCTTCATGTTTGAGTACTTCAAGCCCAAAACCCTGCCAGAGTTTGACAGCTATAAGACAAGCACGGTGTCTGCGGATCTGGCCAACCTGCTGAGGAGGCTTACCGGAATCATCCCTTGCCCTGATGGGCCTACACTTTCCATTGACGAAGTGTCAGCCTACATAGAGGGAGGAGCACTCAAGGTACCGTCACTCCCAGAAGGAACCCCTCCAGCACCCCCTCTGGTCAATGAGCTGTACTACCTGTTGGCTGACTACCACTTTAAGAACAAAGAGCAGGCCAAAGCCATTAAATTTTACATGCACGACATCTGTGTGTGCCCCAACAGGTTCGACTCCTGGGCTGGGATGGCTTTGGCCCGGGCCACTCGCATCCAGGACAAGCTGAACTCGAACGAGCTGAAGAGCGACGGGCCTGTGTGGAAGCACTCGCTCGCTGTGCTGACATGCTTTAAGCGGGCCCTGGAGATCGACAGCTCCAACCTGAGCCTGTGGATCGAGTATGGCACCATGTCCTACGCCCTGCACTCCTTTGCCTCCAGGCAGCTCAAGCAGTGGAGGAACGAGATGCCGCAAGATCTCACCAAATTAATGGAGGAACGTAAGGGTTCGATGCTGGAGACGGCATATAAGTGCTTCCAAAGTGCGTCCGCATGTGGAGGAGACTGTAATGAGGAAGAGTGGCTAATACACTACATGCTGGGCAAGATCTCCGAGAAACGCAAGTTACCACCGAAAGAGTATTTACGGCTCTATAAACAGTCTGCTCATTTTCTCCATGAGGAAGCTGCCAGGTATCCCAGAAAAATCCACTACCACAACCCACCTGATCTGGCCATGGAGGCGCTAGAACTGTTCTTCCGTACGGCTGCCACTATTCTGAAGCTGTTAGAGGAAGAGGGTGGCAAGGACGAATCAGAGCAGAAGGACCATCTGGACTACGAGCTTTTCTTTAACATGCTCGCTGAAGCTGCGGTTGGCCCTTTTGCTCGCGGAGAGGAGAAAAGCATGCCTAAAACAAGCGACAAGGAAAAACCACCTTCTTTGAACGATGAAGACTCACACTCCTCCTCAGCAGTGACGGCGTTGACAGCAGCAAACTCTACAGCAGCAGCCGTGCCCATGGCGACATCGTTGCCCAGCGACGGTGCGGCAGGTGTGACTTCCCCCCCATGCGCGGTCACTCCGCTCGACCACGATTACGCCAAACGTAAAAAGCTGCAGCAGAGGCAGGGGCAGCCGCAGGACGCCCtgtacaggaataaaacacgtcagaTCTCACACCTACCCTCAGCAAACTTCTCTCACGACCACGATTACTGCGGGTCTGGGTGTGCACCTTCTTTGCGAGCGGGACCTGCGTATGAGCAAAGTCAGGACAGCGTGGCAGTGTTATCAGACTCCAGCTCCCTGCAGGACGTGTTCTTGGACCCAACCAGCTCACAGGATAGCACCCACAAGCTGGATTCTGGGAAATGTCAGCCATTTTCTGAAGACACAAACACGCTTATGAAAGACAAAGCAGCTGCAGTGGAAGATGCAGAGGAGAAGCACATGGATGTCTGCTCCACCACGCACTCTCAGGAGTCCTCAGACACCACTCTGTCCGTCACTTCTCCCGAGATGTCCGTCCCCAAACCCCCTGCCCCGGACACGCCCACCCAGGCACCGACCGCCCTGCTGCGCTCCGCCCCTCGCCGGCCCGAGCCACCCGCACCACCCGAGCTGCTGGAGGTGCCCAGGTGTCTGCCGACAGGCCGGGTGGAGCAGAGGAAGGTGCTGgtggagatgtgtgtgagagctcTGTTTTTGTGTCTCAACCGCTTCCCCCAGCACTATAAGAGCCTGTACAGACTCGCCCACCTGTATGCCTGCAGCAAGACGCAcaagAATCTGCAATGGGCAAGGGATGTGTTGCTAGGGAGCAGTGTCCCATGGCAACAGCTGAAGCACATGCCTGCACAAGGACTTTTCTGCGAGAGAAACAAAACCAATTTGTTCAACGGCATCTGGCGTATCCCAGTAGATGAAATCGATCGCCCCGGTAGTTTTGCATCTCATATGAACAGATCCATCGTGCTGTTGCTGGATGTTCTGTCTCAGTTAAGGGATCACGACACGCTGCTCAAGATTTCCCTCATGCTCCAGAGAACCCCTGATCAGGGAAAGAAATATTTGCGGGATGTGGACCGGCAGGTCTTGGCTAAGCGCGCCTTTTTCTTCACTGTGAAAGTGCTGGAGGACAATCTGGATAAACTCACTGCGGTGTCTGATCCTTCTCCTAAGCCTTCCACTTCCTCAATGGGTGAAATGACCACAGCTGACGTGTCCAGCCGGCCTCCTGCCACAGAGGACGCGAAATCCTCTCAACCCGCTAAACCATGCCTTCCAGACTCATCCTCCACACCAGGCTTTGATATCACAACTTCAGGCCCCTGCCAGCCTCTGGCTCCTCTCTCTCAACCCACTCTAGAACCAGGAAATCAGAACCAAGGCACATCAGCAACTTCTCAGCCCAGAGAAGGTAACTCCACCCTGGTGGAGCCTATGGAGCTCGAACCTGGAACATGGACAGGTACTCCGAAACCAGGTCACCCACAATCAACCACGGACAGTGTTTCACATGAGCAAGGAACCCCCAGATTTGCAGCAGAGGGGGCAGAGAGACGCCTGGAAAGCGCCCGGACTCCAGAGCTGTCTCTGGAGGAGTTGAGCATTAGTTCCAAACAGCAGCTGATGCAGGTTCAAGCAAGCACGGCCCACAGAGGACCCCACACTATGACCACAGCACGGCCAAACAGGAAGAGAAAGCTGCTGGAGGATGTTGAGTCGGGCAAGACGCTCTTACTGGATGCATACAGAGTGTGGCAGCAGGGGCAAAAGGTCATGACCTATGATCTGGGGCGCATTGAGAAGATCATGTCAGAGACGTACATGCTAATCAAGCAGGTGGATGAGGACGTGGCGTTGGACCAGGCTGTGAAGTTTTGCCAGGTTCAGATGGCAACATCAGCACAAAGACAGAATTCCAGTGATGCACCCATCACCCCTAAGTTCAGTAAAGAGCACAGAGACATCTTCTTCCCTGCTTCTGTCCCCTCTCCaagcctccacacacacacgcaacctCTGCCTGCCCAGGAGCATGAGACCAAGCTGAGCAAGCCACCACGGCcgcttcacacacactcgcactctCATACACCCAGCACACCGACGCAGATGTATTGCCCGCCTCTAGGCCAGCAGGACCAATCGCAGCCCCGGGCGACACCCAGTCAGCCAATAGCAGGCATGGCGTTCTTACCCCACACAGACAGAGAAGCCTCTGCTCCAGAAGGTCTGGCGTATAGACAGCAGGAGTCTCATTTGTGTCAGCAGATGAAGATGGCCACAGTTTCGCAGAGTCACAACACACAGGAGTGGAGCAGTCACGAAGCCGCTACCTgctcaacacacacagatacagAAAGCGCTGATCAGTCGAAGCAGAGCGATTCGAGTCGGATCCGCTCCCGAATCCCTCCCAACATGCCCAAGCTGCTCATCCCCTCCACAGCCACCAAATTCCCCCCAGAGATCACAGTCACGCCTCCAACTCCCACACTGCTCTCACCCAAAGGCAGCATCTCAGAGGAGACCAAACAGAGGCTCAAAAACGTGATTCTGGCGTCTCAGTCGGCAGCTAATGTGAAGAAGGACACTCTGACTCAGCCGGCGCTGGAAGTACAGGAGACGTCCAGCCAGGAATCGTCACTAGACAGTGAGACGGACGAGGAGGACGACTACATGGACATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403403.2 lncRNA upstream 104539 24848068 ~ 24849544 (+) True LOC113533216
XR_004578578.1 lncRNA upstream 170658 24752541 ~ 24783425 (+) False LOC113533328
TU163669 lncRNA upstream 198945 24730987 ~ 24755138 (+) True LOC113533328
TU164017 lncRNA downstream 120544 25132741 ~ 25134251 (+) False LOC113533115
TU164055 lncRNA downstream 265100 25277297 ~ 25284948 (+) True G138907
XR_004578607.1 lncRNA downstream 297708 25309905 ~ 25333613 (+) True LOC113533374
XR_004578606.1 lncRNA downstream 297708 25309905 ~ 25333613 (+) False LOC113533374
XR_004578605.1 lncRNA downstream 408857 25421054 ~ 25428188 (+) True LOC117597843
XM_026925102.2 mRNA upstream 659 24944113 ~ 24953424 (+) True cep78
XM_026925771.2 mRNA upstream 28644 24878786 ~ 24925439 (+) False vps13a
XM_026925805.2 mRNA downstream 9686 25021883 ~ 25025472 (+) True tbx16
XM_026925610.2 mRNA downstream 71353 25083550 ~ 25099662 (+) True npy8br
XM_026925926.2 mRNA downstream 111404 25123601 ~ 25131707 (+) True kctd9a
XM_026924976.2 mRNA downstream 120548 25132745 ~ 25134258 (+) True LOC113533115
XM_034306325.1 mRNA downstream 143092 25155289 ~ 25157804 (+) True ankrd39
TU163200 other upstream 940357 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 940357 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 1196969 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 1430107 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1694630 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 259412 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 897378 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 903893 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1442275 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1442425 26454622 ~ 26457276 (+) False car15

Expression Profile