RNA id: XM_034306693.1


Basic Information

Item Value
RNA id XM_034306693.1
length 3061
RNA type mRNA
GC content 0.53
exon number 12
gene id hnf1a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29932966 ~ 29946606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTACAGTGCAGCACGCTGGAGCTGAACACACCGCTGCCGTGCGAGAGCCACGGCGTACGGCTGCTTCACACACCCTTCATCACGCTCTCGGTCACAGTTAGACTCTGCACTCTGGCCCGAACTCAGAATGGAGGGAGACGGGGGCAAAGTTCAGcctgacacagagagagacagagagagagtgagagagagagggaggagggggaGAGCAAAGCGAGAAAAATCACCTTCGAAAGCAAAACAACAGCCGGCAGAAGTGGAGACACGAGAGAAGACTAGGAAAAGTGGACGCAAGTCCttactggaagatttaaaaCGGATAAACAGAGCCTACGGAGACACACAGctgggtAATGGAGGGAGGAGATGAGCGAGGGATGGAAGGACGAGTGTGCAGGCTTTCGGCTCTGCAGCAACAACTGCTCTGCTCTCTGCTGGGCTCCGGTGTGACCCGTGAAGTGCTGATCCAGGCCATCAGCGAGCTGGAAAGGGAACGGAACCGAGCCGGAACCGGGGTGGGAGGTGGCGCCGGAGCAGACCGCATGGAAGCAGCGGAGCGGACGGACGGAGAGAGCTCCGAGGACGGAGACTCGGACTTCCCTCCACCCATCTTCAGGGAGATCGAGAAACTACCACCAGAGGAAGCAGCTAGGCAAAGGGCTGAGGTGGAGCAGCTGCTGCAagaggaCCCATGGCGTGTGGCGAAGATGATAAAGAGCTACATGCAGCAGCACAATCTTCCTCAGAGGGAGGTGGTGGAGGCGACGGGACTGAATCAGTCTCACCTGTCACAGCACCTGAACAAAGGTACGCCCATGAAGAACCAGAAACGGGCCGCGCTCTACAGCTGGTACGTCAAGAAGCAGGACGAGATCAGCCAGCAGTTCACCAATGCGAGTCGGGGAATGGTTCTGGGGGAGGAGTCAAGTGAAGAGAACAGGAAGGGGCGGAGAAACCGGTTTAAATGGGGCCCGGCGTCGCAGCAGATCCTGTTCCAGGCCTACGAGCGTCAGAAAAACCCGAgcaaggaggagagagagggactgGTGGAGGAGTGTAACCGagcgGAGTGTTTGCAGAGGGGCGTGTCTCCCTCACAGCTGGCCGGTTTGGGTTCGAACCTCGTGACAGAAGTTCGCGTTTATAACTGGTTCGCTAATCGCCGTAAAGAGGAAGCGTTTCGCCACAAACTAGCGCTCGACCCACCTTacagcagccaatcagcatCCGGGACAGAGCAGAGCATCCCGCCCACTCCCAcacaaggtCTGAAGTTCACTTCCTCTGTAGTGTGCGAGGGCGTAGGGGCAGTGCGGGCAGTGGGGAATGGAGACAGAGCCGATGGAGGACACCTGGGGACGAGTCTCATCCAGCTGGAGCCGAGTCACACGCTTCTGGAAGCACATCAGCACAAACCGgTATCAGGAGGAGGGTCTCTGCCGCCCGTTAGCACCCTGACCTCTCTCCACGgcgtgtctcacacacactccggcTCGCCGCAGGGCCTCATCATGGCCTCCTTACCCAGTGTCATGAGTCTGGGAGACTCGTCTCTGCTcatagGTCTCACGTCCACTCAGCCACAGACAGTTCCTGTCATCAACAACGTAGGGGGCGGGTTCACAACGCTCCAGCCAATCACCTTCCAGCAGCAGCTCCACGCATCCCCCCAGCAGCCAATCACGCAGCAGCTGCCAAGTCACATGACTCCGAGTCCGTTCATGGCCACGATGGCGCCGCTGCCCTGCCACAtgtacaGTAAGACAGATCTGACGTCGTATCCCTCCTCCAGCCTCCTGTCCCAGGCGATGGTCATCGCCGACAGCAGCAGCATCGGAACCCTCGCTAATCTCACCACCGTCCGACAGacgcTGAGCTCAGACCCTGaggaacacacaaacaccccgATCCAGGAGGAGTCACTACACCTGCAGTCCAGCTCTCCAGCaccagTGTCCTCCAGCAGTCTGGAGCTTTATCCCCAAACCCAGTCCAGCGAGACCCACACCTCCCACCTGCTCACCTCATCACCCGGAGACATTGGCCCCTACATCCCCGCACAGATGGTCTCTACCGCTcaatagcagcagcagcagcagcagcagcggacTCACTGGAACGTACCATCAGCGCCTCGTAAATGGGGGgaactatttttttatatttacggCGATTACAGAAGTAAAAACCTTACTGACGTGGCTGAGCGTTAACCGAAGCTGCCTTCGTGTGTCTCTGAGGAATCTctgtggatgatgatgaagatgaagatggaaAGTGCTTTCACTGATgagaacacaaaataataaacatacgTACGTGGATCAGAACAATCCTGATTTTACACACGTCCTGATTTTGTCGAGGCGTCGCCGGAGcagtgtgggcggagcttatgTTAAAattgatcagccaatcacaaactGGATCATCATCGCTATCGTTTGTTTTCATCTCACAAGCTGCTTAGCTTAAAATATCGGTTCTGATTCCACAATATATAACGTTAGTCAGCTAATTAGCTCTCTGACGTTAagtagctagccagctaacacaTAAATAGTGCGATGATGTCATCGAGTTAGCGAGTGATTGTGTAAATCAGCAGCCCTTGACTTGAACCCTTTCATATCCAACGGTAATTATTGttaaacacttttaattttctctgtaaatattattttgatgtataaaatgaattaaaattgtaTAAGAAAAAGAAACGCTTTTTGTTAGCCGTGTTTTTGAGGCTTTTCCGCACCTCAACACCAGCTCACTGCTAGCGAGCTAACTGAGCTAACCCGAGGCTCTACGTCATGTGATGttagaaagagaagaagaagcgagagaaaatgttgaaataaagtttcaaaaaaagagtgagggagaaaagcatgaagaaaaatgaaagtaagGAAGCAGAAGATTTACAGAATAAGAAAGAGATagataaaaaaggaaagaaagaggaagtaaTGTAAAGAGCGACAGATGaagagctgctgattggtcggctCTGAGGTGCCGTGTGACATCATCAGGGGCAGTTGGAATTCAAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08036 TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166562 lncRNA upstream 428094 29503683 ~ 29504872 (+) True G140943
TU166544 lncRNA upstream 511672 29420880 ~ 29421294 (+) True G140935
TU166505 lncRNA upstream 581210 29332414 ~ 29351756 (+) False LOC117597881
TU166491 lncRNA upstream 635169 29297050 ~ 29297797 (+) True G140910
TU166461 lncRNA upstream 686650 29239482 ~ 29246316 (+) True G140884
TU166928 lncRNA downstream 3252 29949858 ~ 29968041 (+) True G141235
TU166943 lncRNA downstream 5159 29951765 ~ 29954068 (+) True G141247
TU166930 lncRNA downstream 18161 29964767 ~ 30022919 (+) True G141236
TU166931 lncRNA downstream 24797 29971403 ~ 30022919 (+) False G141236
TU167045 lncRNA downstream 82297 30028903 ~ 30033768 (+) False ggt5a
XM_034306907.1 mRNA upstream 5 29930249 ~ 29932961 (+) True LOC113546086
XM_034306906.1 mRNA upstream 3896 29903513 ~ 29929070 (+) True LOC113546064
XM_034306694.1 mRNA upstream 22014 29909977 ~ 29910952 (+) True LOC117597833
XM_026945800.2 mRNA upstream 29723 29899457 ~ 29903243 (+) True LOC113546087
XM_034306781.1 mRNA upstream 45611 29878359 ~ 29887355 (+) False prkab1b
XM_034306392.1 mRNA downstream 82255 30028861 ~ 30040856 (+) True ggt5a
XM_026945859.2 mRNA downstream 164191 30110797 ~ 30131740 (+) True lrrc75ba
XM_034306882.1 mRNA downstream 187330 30133936 ~ 30160538 (+) False LOC113546114
XM_034306884.1 mRNA downstream 187330 30133936 ~ 30160538 (+) False LOC113546114
XM_034306889.1 mRNA downstream 187330 30133936 ~ 30160538 (+) False LOC113546114
TU166924 other upstream 3812 29910029 ~ 29929154 (+) True G141234
TU166932 other upstream 6231 29908415 ~ 29926735 (+) False LOC113546064
TU166933 other upstream 6231 29908415 ~ 29926735 (+) False LOC113546064
TU166920 other upstream 6497 29925577 ~ 29926469 (+) False LOC113546064
TU166919 other upstream 8760 29903528 ~ 29924206 (+) False LOC113546064

Expression Profile