RNA id: XM_034306715.1


Basic Information

Item Value
RNA id XM_034306715.1
length 1930
RNA type mRNA
GC content 0.40
exon number 4
gene id si:dkey-20d21.12
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 7954723 ~ 7959217 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCATACTTagtgtcatttatttttgtttactatAACTGTATCATCGTTTGGCCCAGAATCTATTAATATATGCCACATGCCCTCCTGCTTTACTGCGGCTATTTTGGGTGCGGGAATGCTGAACTGCCCCACACTGCCTGCACATACTGGTGACAAGTAGAAGGCATGAAACAGGGCAAGCTGTTtcatactgtacactatacttaatctgtttctctgttgaagagaattaaaaaattgtactaTTGGTTGAGTTTTAAGAAAGCTATATTGTAACTGAATTTTAGTGTGATGTGACATTTCCATTATACTGGTGGGTTTATGAGGCTCTTGATTTGGGATTAGAAACAGGTCTGGATCTTTCTTCACAGTGTTGGATGAGGATGCACTCCCAAGTAGTTTCGGTCAggtctcctccatctcctccttcaGCATTTGTACCTATCAGTGATAAAGACATGACTGAGATTGAACTGCACGCTGTGGACTCCATCAGTGACCTGCACCGCACACACCCTGAACAACAGAGCAAAGGTGTCCGACCTCCACGCCCACAACCTCCATCCATCAATGGGAACCTGCAGATGATTGACAGGCCAGTTGTCTGTCAAACGGGGTATCGAATGAGAAGATCCCATTTGAGTCAACTCAGAGATATGTGGACTTCCTCCAAGTGGCGCTACTCTTTCACATGTGTGGCTGTAATGCTGATCCTTCTCACCGTCATTCTCATCTTTAGCTTTTTAGTCCAGCAGAGCAGAACTCTACACAGGCTAGCTGAGGCTCTGAGGCAAAGGCAAGAAACAACAGATGAAATGTCCATCATCTTTCAGGAGCTCCAGGCTCTGCGCAGAAACCTGACGGCACTGATGATCAGACACTGACCACGCACAAACATGCACAGACATCTTGAATACGGTTGATGATCCTGTGTATGTAAAGCAGTGTACCAGGGCCAGTCCAAAAGCTTGTCAAGATCAAAATTCTATCAACATGGGATCTCAAAAAttacagacacactccacaggtTGTGACTGACTATAAAACAATCTTAATGACGCAGTGGTAATGGAGTGTATGTTTGTGGATGTGTTACAGATTGCCAGTTAGAATCTAGTCTAGTAGACCTTCTTCTAAGCACCAGTTGGAGTAGGTAGTTGGAGACTGAGATTCAGTAAAGTGGACTACAGCtacattttgaatttgaacTCATTAAGTCTTTTAAACAGCTCCttattatgtattaaataacGCTGGATTTATTCAGTGTATCTGCTTTAGTATACTGATGATAAGAGTGACAGCAGAGTTAGTTAAGCACATAACATGTTACAAAGCAAGCTCAGTATGTGCCCAGGAAATTACTACAGATTACTCCACAGTCAGAGTTCAAGGAACTGTATAGATACATTTTGTTCTTAAGTTACAAATTATGCAAATGCAgcctcaaaatgcacaacagtgGTTCTTGAGGTCCAATTTTGTATCTCAATGTTCCTCTAACTAAAGATACAATGACACATCATATGTAAGCATTTGTACCTTAAAATCCCACTTTAGTACTGTTCTGATAAGTGTGGAGTATCACTATAAAAGAACACATCTAGTATGTAAGGgggaaaaataagaagaaactGAGAAAATGAGTTTTATAGACATCTGATATAAAGGACCAGATAATCACCAAAAACTGCTCTGCAACTAACCTTACCATATGGACTCTAGCAAAAGCAGTGTGTGATCATGAGACCATCCAAATTTATGGTCATCTCCAGAACGAGTACTGTTTAAGATCAGGTAAAATAAGCGCAGGTAAAAATAGACTCTAGAACAGCACGCTATCTTAGAGAGATTTGATCAAAATGTGCCAATAAATACTATTGCTTATTAAAAAGTTGTACATATTATAAAACAAGTACATAAGGACC

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0007507 heart development biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0071690 cardiac muscle myosin thick filament assembly biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152117 lncRNA upstream 25019 7927566 ~ 7929704 (+) False G128775
TU152119 lncRNA upstream 25019 7927566 ~ 7929704 (+) True G128775
TU152183 lncRNA upstream 50340 7903500 ~ 7904383 (+) True G128823
TU152143 lncRNA upstream 93212 7856004 ~ 7861511 (+) True smim1
TU152139 lncRNA upstream 93212 7857854 ~ 7861511 (+) False smim1
XR_003402768.2 lncRNA downstream 9062 7968279 ~ 7970772 (+) False LOC113526371
TU152198 lncRNA downstream 13137 7972354 ~ 7998833 (+) True G128837
TU152220 lncRNA downstream 20427 7979644 ~ 7994612 (+) True G128851
TU152532 lncRNA downstream 99156 8058373 ~ 8058715 (+) True G129096
TU152534 lncRNA downstream 112515 8071732 ~ 8071942 (+) True G129098
XM_034306604.1 mRNA upstream 32982 7916766 ~ 7921741 (+) True c8h1orf174
XM_026928478.2 mRNA upstream 45001 7873393 ~ 7909722 (+) True cep104
XM_034306638.1 mRNA upstream 45001 7873393 ~ 7909722 (+) False cep104
XM_026928485.2 mRNA upstream 49208 7873393 ~ 7905515 (+) False cep104
XM_026916283.2 mRNA upstream 93153 7856511 ~ 7861570 (+) False smim1
XM_026916892.2 mRNA downstream 158360 8117577 ~ 8122886 (+) True LOC113528372
XM_026914400.2 mRNA downstream 340138 8299355 ~ 8301673 (+) True si:dkey-72l14.3
XM_026926795.2 mRNA downstream 435772 8394989 ~ 8402547 (+) True LOC113534163
XM_026912711.2 mRNA downstream 523866 8483083 ~ 8541426 (+) True ajap1
XM_034306375.1 mRNA downstream 523866 8483083 ~ 8541426 (+) False ajap1
TU151932 other upstream 523726 7424023 ~ 7430997 (+) True mrps36
TU151927 other upstream 527166 7424023 ~ 7427557 (+) False mrps36
XR_004578572.1 other upstream 1149413 6756763 ~ 6805310 (+) False phf19
XR_004578571.1 other upstream 1158647 6756763 ~ 6796076 (+) False phf19
XR_004578621.1 other upstream 3191732 4743239 ~ 4762991 (+) False srpk3
TU152202 other downstream 9018 7968235 ~ 7971749 (+) True LOC113526371
TU152708 other downstream 347947 8307164 ~ 8312656 (+) True G129247
TU153960 other downstream 2398729 10357946 ~ 10358315 (+) True G130390
TU153993 other downstream 2597301 10556518 ~ 10563561 (+) True zmynd12
TU154218 other downstream 2910917 10870134 ~ 10874017 (+) False mrpl55

Expression Profile