RNA id: XM_034306727.1


Basic Information

Item Value
RNA id XM_034306727.1
length 2610
RNA type mRNA
GC content 0.47
exon number 10
gene id pdlim2
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24561931 ~ 24624156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTTATCGATGATGCCACATAGCAGTAATCTCAGGGCGAGAGCGCGCGCTAAAAGCCCTGTAGCGAGGtgtgcagtcacacacacagacgcacacgcgcgcgcgcgctgaATAAAGGTTAAAAAAGCAAGCGCGAGCTTCTGTGGCAGGTTTGCgttttaaaaaacacaagaagGAGGCAGACCTTAAGAGTTTCATGGTGATATTTTCTGTGTAAGAAGCCTTCGTTACAGACAACCTTCCCACattacttcttttatttttgattattttgtttttgacacGAGGGGCTGCGCGCGCGGAAAATCACGCGCAGGTGTCAGCGGTTGTAGCggctaatttttaattttttttttttttttttttgtacctcaGCGTCGGCGTcgtgttgttgttttgttgttaaaaaaaaaactccgGGCTCCGTAAGGTGGTGCACAGCGTCCTGCGGTCTCATCATGGCTTTCACAGTGAACCTGACTGGCCCATCTCCCTGGGGCTTCAGAATATCTGGTGGGAGGGACTTTAAGAAGGCCATTACAGTCTCCAAGGTGAACCCCGGCAGTAAAGCTGAGAAGGCCTCTCTTCAACCTGGTGACGTAATCATGGAAATAAACGGAGAAAATACTGGTGACATGCTGAACGTAGAGGCGCAAAACAAAATCAAGAGCTCCAAAACACAACTGCAGCTGCTAGTCGAGAGGCCAGCCCCTTCGAGTCCTGGTCAAACCAACGGGATCAGTTCCACAGAGCAACTGGTGGGCCGTTTCCAGGAAACCCTGCATGTGAGGGATGAGAACCAGAACTACAGAGAGTACTCCATCTCCAGCCCAACATCTTTCTCTCCAGGCCCATACTCCCCAGAGCCACCCTCCAGCCCTGAGCGCAAGGGGGGCAGGATCACACCCACCATGAAGAGCCCAGTGTTCCCTTCCTGGACTCCTGAAGAGAAAGTCACCAGTCACAGACTGTCCAGGCCACTTTCTCAGGAGTTTTCCACGGTGGACTTCCGCAGCAACTCTGTGTCCAGTCGAACTCCGACGCCTCCTGAACGCTACTCGCCACATAGTCCAATCGAACGAGAGATACCCATGTCCCCCCGCCGCAACAgCTCGGACTTTGCGATGCAGCGGTTCGATCGTGAATCAGAGGTCTACAAGATGATTCAGGAGAACAAGGAGTCACGTGCAGCTCCTCGCCAGTCCAGCACCTTCAAAATGCTGCAAGAGGTGTTGGAGGCTGATGAGaaagagGCTGCTCTCAGGTTTCCAGGGAAGCTGTCACCAAACCCACCGAAGCCGATTTCGTCTGTCGCTGGGGTCCAGAAATACCACACCTGTGAAAAATGTGGCAACAACATTGTCACCCAGGCGGTGAGGATCATGGACGAGCGTTTCCGTCACCCTGAGTGCTACACGTGCACAGACTGCGGCCTCAACCTGAAGATGCGAGGCCACTTCTGGGTGGGAGATGAGCTGTTCTGCGAGAAGCATGCACGCCAACGCTATCAGGGGCCTGGTGCGGGCTACCGCCACCCCATCTCCCCTCACCACTGAAGCGTCTGCtgtctcactccctccctcactccttcCAGCACAGAGAGCACAGCGAACTCTGAGTAGCCTGCACAGAACACACAGCTTCCTTTTGCTTTAGAGGAAGAGCACCCTCTACCTCTTTAGCTGCATGTGAAGTGTGCTAGCTGTTGACTCTGGGAGGGGATGAGGTGGTGTGTAAGCCAGTACAGCGAGTATCCTACGCTTTAAGCCTTGCTTGCCAGTTCTTCACATTGTATTAGGCTTTTGTTTCATTATCTCTACCATGGATTCATTTAAAACTTCGGTTGGGTTTCACTGAAATGTACAAAACCGGGATCTgcttaatataattatattcatcACAAGAAATGTATAGTGCACACAGGACTGGTttccactgtgtgtttgtgtgcgcaaTCAAGTTTAATTTAGCCATCGTTTTTGAATGATTATTGGTTTCTTATAAAAAAGATGTTGAAAGTATTTTGCCAATCATATATGCAGAAACgcgcatacaaacacacattcctCTTGTATAAGCACAACCATTTATTTCAGGGCTGCTCACATAGTGGCCCAAATTTACCAACAGAAACTGCAGCAGTTGTATCCATGGATCAGATTCCAGCCCATTGACTTAAAATGTTTTGGGCAGCcctgatttttcatcttttcatttactttttttttccatctacaAGGGAAATGTATATCAAAGCAATATGaataataacatgtttatgtaaatatgtgtattttctctttatggatatatatatgtagaatGATAGTGGATAggtttatatgtgtatgtttcCGTTCATGTCAAACTTGATACTGAGTACACATCATTTTGATATGATGgaaatgaaagtgtgtgcatAAACATAAAgccagattattttttaatactggCCTTCACACAAGTGGCatattttcatacacacaacTCCACCACTGGTGACTTGTTTGATGGATGGCTTCTGAAAAGTTATGTTGTGAATTGTAATGTTAGCTGTGCTTTCCTcacctttttccttttcaaatataaaatttcCTGACGTAaatga

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163604 lncRNA upstream 59560 24502086 ~ 24502371 (+) True G138535
TU163307 lncRNA upstream 198170 24362949 ~ 24363761 (+) True G138280
TU163261 lncRNA upstream 437362 24121610 ~ 24124569 (+) True G138239
TU163191 lncRNA upstream 571834 23989898 ~ 23990097 (+) True G138176
TU163176 lncRNA upstream 667215 23890430 ~ 23894716 (+) False praf2
TU163649 lncRNA downstream 22623 24646779 ~ 24647451 (+) True G138578
TU163669 lncRNA downstream 106831 24730987 ~ 24755138 (+) True LOC113533328
XR_004578576.1 lncRNA downstream 127884 24752040 ~ 24754872 (+) False LOC113533328
XR_004578578.1 lncRNA downstream 128385 24752541 ~ 24783425 (+) False LOC113533328
XR_004578577.1 lncRNA downstream 128513 24752669 ~ 24754872 (+) False LOC113533328
XM_026925021.2 mRNA upstream 2903 24505197 ~ 24559028 (+) False sorbs3
XM_026925020.2 mRNA upstream 2903 24506881 ~ 24559028 (+) False sorbs3
XM_026925019.2 mRNA upstream 2903 24506912 ~ 24559028 (+) False sorbs3
XM_026925022.2 mRNA upstream 2903 24507675 ~ 24559028 (+) True sorbs3
XM_026925018.2 mRNA upstream 2903 24511732 ~ 24559028 (+) False sorbs3
XM_026925600.2 mRNA downstream 8068 24632224 ~ 24691440 (+) True adgra2
XM_026925262.2 mRNA downstream 69181 24693337 ~ 24712086 (+) True rab11fip1a
XM_026925769.2 mRNA downstream 254630 24878786 ~ 24925439 (+) True vps13a
XM_026925772.2 mRNA downstream 254630 24878786 ~ 24925439 (+) False vps13a
XM_026925771.2 mRNA downstream 254630 24878786 ~ 24925439 (+) False vps13a
TU163200 other upstream 548205 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other upstream 548205 24011617 ~ 24013726 (+) False fkbp1aa
TU162995 other upstream 804817 23750417 ~ 23757114 (+) True G138010
XR_004578528.1 other upstream 1037955 23514586 ~ 23523976 (+) False pabpc1l
XR_004578647.1 other upstream 1302478 23248348 ~ 23259453 (+) False tprg1l
trnae-cuc_21 other downstream 647453 25271609 ~ 25271680 (+) True trnae-cuc_21
TU164394 other downstream 1285419 25909575 ~ 25916798 (+) True LOC117597866
TU164395 other downstream 1291934 25916090 ~ 25916798 (+) False LOC117597866
XR_004578635.1 other downstream 1830316 26454472 ~ 26461875 (+) False car15
TU164784 other downstream 1830466 26454622 ~ 26457276 (+) False car15

Expression Profile