RNA id: XM_034306742.1


Basic Information

Item Value
RNA id XM_034306742.1
length 7917
RNA type mRNA
GC content 0.57
exon number 37
gene id cep350
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1475101 ~ 1501389 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCTCGCGAGAACGTCACTAACTTCCTGCAATAGTTGTTTGGATAATGGCGGCGCGTCAGCTAACAGCGCTTCTAACCTTTCATTAAAACCGGGGAAATACCCGACAATCAGCAGGAATCGAGCACAATAAACGCTTTCGAGTCTGTTTCTGATGCCTGCATTGGGCTGGAGGGCACGAAGTCATGGTTCTCTGAGAAAAGCTCCTGTCAGGAGGGCGGAGTAGCGATGTGGAGCCAATCAGGAGGAGAGAAACCTCCAGCGATGGATCCACGCGTGGCGGAGTACGagcTGTCATCTGCATGGAGGAATCTGAACCAGAGCAAAGCAGCTctGCGTCACATTGAGAATCAGTTGGAGGCGGCGGTCGGTTCGGGAGTCGTCATCACCTCGCTGAACACCGagaagacacacaaacacaaacgcagaggtaggCGGAGCTCGGATGGTGATGATGTGGCggttaagccccgcccacagaGTCGACGCAGCCCGGATAAGAGCTCTCGGAGCCCGCTGAGGACCAGCACgcaggacaacacacacacctcagacagACCCGTGTCCTCTCCTCCTGACGCATCTCTGAGTCGCCTGGTGTACGACCGAGACTGTCGTCCTCTCCACTCGGCCGACGCGGACAGCACTCGCTCCTCTGCGCTAGACGCCACGACCGTACGCGTCCTCAACGACCCGCCCGCTCCGCAGAGGTCGGAGGTCACGGCGGGGGGGTCGGAGGTCAGCCCGGGGTCGGCACGGCTGGTGAAGCTGCGTCAGCGTCAGACGGATGAGAAGCTGGAGAAGCTGAAGGAGAGGATCAGGAGGCAGAGGGAGCAGCTGGAGGAGGCGGCAGACGGGGGGCGGGAAAGGGCGATAGGGGCGGGGCAGGGAAACTCTGCCCACCAGCACGTCGCTAAAGTGCGCAAAGTGGCAGCCGCTCCGCCTGCGCCGAACTATAAAGGGTTTAACAACAGCGAGGTGAAGATCCGCTCCTCAGACGGCAGAGTGTGGGGCGAGGACGAGTTTCACTTAAACCCCGAGATTTATAAAGATCTCACGGACCGTCTCAcggAACGAGCGAAACGCAAACCGGCGGAGAAAGAGAAGcagcagcatcatcatcatcatcatcaggagaGGAAGCCGATCAAACCCGTGAGGAAGATCCACCGATCTGCGTCTGTTCCCGAACCCAAACCAGCGATCAGCGTGTCGTCATGGCGAGAGGGCCAGAAACTGGTGAAGATGATGCTGGGGCCGTTGCCACGGGAACCTCGTGCTCAgtcggaggagagagagagacggacaggtacagCATCTCTGTCCAGTTCTGTCCCTCAGCCGGAGTCGAGCCACCGCTCGAGACCGAGCAGCACAGAGAAACCTGCAGTGACTCAGCCCTCCCGAGCAGCAGGGGGCGCCAGAGGCAAAGAACAGCCCCCAACTCGATCCTCCAGGCCACCAGGGGGCAGCAGAGAGCGAGAAGCTGCAGTAACGCAGTCATCCAGGCCACCAGGGGGCGCCGTCGGTCTGTCCTCCAGCCTCGACTTTCTCCCTGCAGACGTTCGCGGCATCTTAGACGACCTGCACCTGGAAGACGGCGCCGGGTCGCACGACGCGGGCCGAGTCGGCAGGAAGAGGGCGGGACGGAGCCCATCGAAACCACGCCCTGAGAGCGCAGAGAGGGCGTTGCCACGGAAACGGCACTACGACGCAGACACGGTGCGGCGCTACATCGCCAAGCagcaggaggagaggaagaggaagcagGCTGAGGAGAGGCGGAGTCAGAGGGAGGAGCAAGAGAGGCGGAGTCAGAGACTGCAGGAGCTGTACAAGAAACAGCGAGAGGGCGTCGCCAAGcaacaagccccgccccctaaTCTCATAAACCCACGTCTGCAAGAGACGTACACCAAGATACTcctggaacacacactgcaacggACGCGACCGGTGTATCAGCCGTCTGGAGAATCAGATAAAGAGAACAAGAGACTGGAACCACTGAGTCCTTCCACTAGTGAGCTCTCAGAACACACACCGTCTCCACtgtgcagggctgaTTTGGTGGCGCCCCCTCCTGGTCAATTCTTCTCCCATCTCCTCAGTCTGGAGCCGGAGTGTGTAAACTCGGCGACACAcctgcaagacacacacactgtggacacACACCAGGTGAGGACGGGCCACGTGGACACACACGCCGCGAGCAGGCTGAACCGCGTGGAGGCCCTGAAGGCGTGCGCCGCCTCTCTGTCCAGCCGAATCGAAACCGAAGCGCGAAAGCTCGTCACCTACGGCAACACCGATGTCAACGATGGCCACGCCCACCGAGTCAAACCGCCGAGCCCGCCGGAGAGAGAGCGGCCTGATTCGAGCTCGAGGATCCACAACGACGTGAGCGAACTTCTTGGCGTCGGAAACCTGTACAGCTTCATCACCCGAGAGGGGTGGGGCGAGATCGCAAAACCCCGCCCACTCCCTGCAGGCTCCGCCCTCCCGTTCACCAAGCAGGAAGAGAAGCACGACTCAAGCGGAGGCTCCATCAGCGAGGGCGTGCTGAGCGACGGCAGTCTGTCCGATCCCGGCGATTATTGTGCCGCTCCTAACGAACGCCACGCCCACACCCACGACCGCATCACGCTGTTCCGgaaggaggcggagcttcaCACGCCGTATAGGCCTGTGGTGACATCACAGCCTCCGTGGGAGGAGCTAAGCAAGGGCAGCCCTCACAGCGTCATCAACATATTCACCAAAAACCTCAACAAATACAGCAACGtgatggaCACAGAAGTGGAGAGATCTCCTCCTGCCCTCCGTTCTTCTCCGTCTGCTCACAGCTTGGCGAATGGCGTAGTTTACGAAGACGACTTCGTTTCCTCCCGCAGCAGTAGCCAATCAGCATCAAAGAGAACCGCTAACGGCGTcagTAATGGCCGGAGCTCTGCGGCGGCGGACGAGAGGAGAGAGAACGACAGATTTCCTCACTCTTCCGCCTCCACTCCTTTGTCCTCACCTTCTTCTGCTCACTCTATCAGCAAGagagGGTCAGAGAAGAGTCTGGAGCGCACCCTAGTGGACGGACAGAGAAGCGCGTCGTCGTTCGCCTCCGAGCCTCAGAGGAGCGACTGGAGGAAGAGCGACTCGCCTCGAGGCTCTCACAGGAGCGCTGACGGTAACGGCACACCAGGGGACGCCTCAGTGCACTCCGCCCACAGcgtGGTGTCCGAGATCCCACAGTTTCCCAGAAGCCCCGCTGACTCTCCCAGAATCTCCGGCTCCTCTTCATCCAGTCCCGCGTCTGCCAGAGACTCCACCCCCAGACCTGGAACAGCTCCTGGCCCCGCCCCTAACACTGGCTCCGCCCCTGGACCCGCCCACAGCACCACAGagctgCATTTCGCCCCGGTCGTGCTGCAGCAGCGTCTAAGCGCCGAGCTGAACTTCCTGGACGCGGTGGAGGAGTCGGTGAGACAGCTGAGCGACGTGGAGAGAGTCAGAGCTGTCTCACTCGCTCAGCAGGAGAGCGTCTCACTCGCACAGATCATCAAGGCTCAGCAGCAGAGGCAGGAGCGAGAGCTGCAGCTGCTGAAGCTGAAAGCGGAACAGGAAGCGCTGGAGACTCAGAGACACGTCCAGGAGAGCCGAGAGAGAGcagcacaggcCCATGCGGAGCTGTGTGTGAACCTGGTTCAGTCCCATCAGAAGGCTCTCATGGAGCTGCAAGAGAGCAGCAGCAAGATGATCCACCAGCACACAGAGACGGCTCAACACCTCCGAGAGatgACGGAGATGACTCGTTCTCAGATGCTCACCGTTCCGTCTGTCACACCTGTAAGGCAGCAACACCCACAAACCGACAGtgccaGTAGTAGGAGTGAAGTCTCGGCAGAGAAAACGCCAACAGCAGACACTCCGCAGAGCAGCCTGACCGAGTCTGAGTCTTTCAGGATACACACtgtcagTGCGAGACAGGGCGACGGAGGAAGCGTGGACCGGAGCAACTCGGTGGAAGAGGAAGCGAACACCGCCGCCGATGACTCTCTCCAAACCGACAGAGCAGACAGCGTCTCAATCAGTTACTCTTTGAAGTTTGATGAGTCTGTGACGGAGGACGAGTTGGAGAAGTCGTTCCGCTCCGTGCTTCCGTCCGAGTCTCACTGGAGAGGATCCGTGGAGAGGAAACGGCAATCGGATGAGGAACCCCACCCTGAAAAATCGTCTAACAagCAGGACGGCGGTGTCCCGGTGTTCTCGGCGGATCAGTACAGTTTCTCCGAGTTCACCATGGCGATGGTGAAGCAGTGCATGCAGGAAGAGGAAGTTCGCTCTCGGCATCAGAGCTCCCTCCTGCGCCTCCGACACCGAGCACTGAAGGAAAAAACCCGCGCTGAGCTCGAATGGCTCGAGCTCCAAAAGAGGCGTCTGCGTGATAAAGGGGAAGATGATAAAATGCCTCCGATTCGCAAGAAACAGCGAGGCCTGCTGCTCAAACTACAGCAGGAGCAGgcggaGATCAGGAGGCTGCAGGAGGTGAACCGGGCGGCACGGAGGGAGAGGAAACTGTTGCTGAAACAGCAAGAGGAGATCGAGAGGATccaacacacaacactgaaaCTGAGGGAGAAACTCAGGAACGCTGAAGATACAAACCAGAGGTCACCTGTGTCAGGTGTGAGCGAGGATTTGGCCCCTCCCACCGAGCTGGACGTGGAGTTTCGTAGCCCCTCCCCTTTATCTGTGTCAGGAAGTGAGACCAGCAGCATAAtgaagaaactgaagaagaTGAGCTATCACACAGATgagagATTTCTAACTCAGCGTGAGCTGCGATTGGTGCACTGGCGTCAGCAGGTGGAGGCGGAGCTGAGGCGTACGGATGGGGCGGAGCCTCAGCGGAAGGGGCGGGCCCTCTCAGACCGACACACGCAGCAGAAACACAGCACAGACGAGCTGCAGAGcgacagacaggaggagaggaagacagGACGAGAAGTGTGCAGTGAGGGCGACTCGTCTCCGGCTCTGTCCGTCTCCAGCATACACACAGTGCAGGagtgtgagaacacacacagtcatgagtctcCCCTGGTTCATGCGAGTTCCAGCAGTAAAGTGACATCACACAGCAGCTCCAGGAAGCGAGACCTCCCTTCATCAGCTCCTACATCggAGGCGGCTTCGGATCAGAGCGACATCGAGGGGCGTGTCCTGGCTCTGAGGGCGGAGCTTCGACGGCGTAAAGCTGAAGTGCAGCGTCTGAAGAAGGAGCAGAGACTGAGAAACAAAGAGCGGCTGAAAGCTCAAGAGGCCAGTCTGCTCAAACAGCTGGagTCCTACAACGACTTCATTCAGAAGACCAAAGCCGAGCTGAGTAAAGCGGACAGCGTCACTTCGGCTAAACCCCAGATCAAAACTCCAACGTCAGGCTCGCACAAGTCCAGAACCAAAACCTCCACCCCGGACAGGTCTGAAACGGAGAAGAGTTTCACAGGACAGAGTCACGAATCCGAATCGGAGAAATCCGACAGGATACACACGGAGTCTCCAGCGCTGAGTGATGAAGATCCTCCCACTGTGACTCCGACCCCGGTGTTGGGAAGCCCTAATCATCTGAGTCCACCTGAACCCCAACACGATGAAGACACCCGACCCGAAAGCGCCGCCAGGCTAGAGACAGAAGCCTCGTCCAATCAGAGCATAGACTCCAGCCCGAGGTCGGAGGTCATCGAGGAGCTGGAATCTCAGAGGACAAATTTGTCCCAGTCGGAACACTCGTATCCGGTGCTTGATCTGAAAATCCAGGACTCTAAAGAGGATTTCTCCAAGAATGAAACGGAAATTGCTCTTGCTGTAAAAGTCAgccatgaagaagaagaagaagaagagtttgTGAACAATTCTGAAGATGTTAAATCCAGTTCCTCACTCTTAACTAAACCAGAACCAGAAGAACCCAAACCTCCAGAGATTCCTTCATCTATAGACGTCTCTTACACTCCAGACGTTTCCCAGAGAAAGGAAGACTCAGAGCACAAACCCACCGCGTCACCATCAGTCGACAGCTACAATGATGATTTCAAGTCAGCGGTTCCGGAGGAAAATCAGCCTCACTCGCCTTCTTCTGAAGATCCAGAAGAGGAATCCTACAGATTCTccttcagcagcagtgaggagGAGATAGAGGAGGAGATTAGCGTCAAATCAGGGAATACTAGCGGTACCTTCGACCAGGAAAAACCTTTGGATCTCGATTTCCTGGGAAAGCAGACAAAAGAAAGCCCTGATGATGATGTTCCCAGCCCTCCAAAGTCTCCAAAGGATGAGATGCCTGATTACGTCATTGGAGACCGGGTTCTGGTGAGCAACGTTCAGCCAGGAACTCTGAGATTCAAGGGACAAACGAGCTTTGCTAACGGATTCTGGGCTGGAGTGGAACTGGACGTATCTGAAGGAAGCAACAACGGCACTTACGATGGCGTCGTTTACTTCCAGTGCAAAGAGAAACACGGAATATTCGCTCCTCCTGAAAAGATCTCTCGTCTACTCGAGACGTTTGAAGGCCGTACCAGAACCTCAGAGGAGGAAGATTCCTCGTTTGATGATCGGTCGAATGAAATGGACAAGACAAACAAGTCTGAAAGCACGCTTCAGAATAAAAAAGCAGATCCGGATCCACCTTCTGAGACAAGAGAACCATCTGAGAAACATTTCGATCTTGAATCGAAGCCTTCTTCTGTTTCAGAAGATTTGAAGATTGACCCTGCTGCTGTTGATGGCGAGATCTTCAAGGACCTTAATGGAGAAAATCATCCTGTGTCACTTGAGAGATTCGGAGACGTCGTGCTGGAATTGAAAGATGTCTCAAAAGTCGAGGAAGTTCAGGAAGATCAAACGCCAGACATTCTGGACCTGCTGACCCGTGCTGAGACATCCACGCCGACTGAGGACCTTCAGAAATCTTTAGACGTCCCTCCTGAGAAGACGAGCGAGGACCGCGTGGATGGATCAGTTGTGACGGCGAGCAAATCCCTCACGACTCTGGCCGATACACTCATGGAACGCTTCATGAATGATGCCCTGGAACAATTTCAGCAGATCAAGAAAGCAAAGGAGGAGAAAATCTCAGCTGCCAATCAGCTCGTCTTTcttgatgaggatgaagaacCCAGTGGGAACAACGTGTCCCAGCTCAGAACTTCATCCAGCACCAAGATCAACAAGGAAAGCTTCCATAGCTTCTTCGACAAGGACCAAGAAGAAGTATCTTCTCCTGAGCTTTGCAACCGATCGGAGAGCCCGGTGTTGGGTCAGGAGGAGCTGGTCCAGCGCTTAGCGGAGCTGAAGCTGAACCCCGACTTCCTGCACGTGCTCGGAGACGAGCAGGACTGGTTCGACGAGGACTTCGGCCTCAGCTCGCGCAAACACGCTCAGCACAAGAACAAACTCAGGCAGGAAGAGCTCTCCTCCACGTCTGCAGCTAAACTCCCGCACGTCAGGCAGCAGGAGGAGGCGGCGGCGGCGGCCATGTTGGTCCCTCACAAAGCAGCCGAGGTGGAGAAGCTGGTGAGCGCCGCCCTGCTGGAGATCTGGAGGAGCTGCGGGATGGAGCGCGGTAATCAGAGTCTGACGGCGGTGCCCAAACCTCAGGCATCAGAAACACTGCTGGGGGATAAGAACAGCGAGGAGTGTGTGCGCAGCTACAAACAGgcGGTGTTTGACCTGGCGTGGGAGCTCATGCAGGAAATCTACGCCGAAGATCCCAACACCAATCGCCCGCTGTGGATCAAACCTCGCCGTGTTAATTCACCCTACACCCACAGAATCGACGACCCCAGTGACCTCACTaaagtccaggtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgagagtgtgtgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147817 lncRNA upstream 131181 1340886 ~ 1343920 (+) True G125061
TU147775 lncRNA upstream 168956 1305720 ~ 1306145 (+) True G125031
TU147673 lncRNA upstream 246045 1228289 ~ 1229056 (+) True G124947
TU147646 lncRNA upstream 273175 1191075 ~ 1201926 (+) True doc2d
TU147856 lncRNA downstream 3637 1505026 ~ 1507275 (+) True G125089
TU147866 lncRNA downstream 42447 1543836 ~ 1592893 (+) False G125098
TU147867 lncRNA downstream 44305 1545694 ~ 1592893 (+) False G125098
TU147865 lncRNA downstream 90594 1591983 ~ 1592893 (+) True G125098
TU147885 lncRNA downstream 116231 1617620 ~ 1618870 (+) True G125116
XM_034306659.1 mRNA upstream 211447 1257443 ~ 1263654 (+) True LOC117597828
XM_034306658.1 mRNA upstream 219166 1246530 ~ 1255935 (+) True LOC113535335
XM_026928160.2 mRNA upstream 274583 1155413 ~ 1200518 (+) False doc2d
XM_034306586.1 mRNA upstream 363034 1103715 ~ 1112067 (+) True lonrf1l
XM_026911599.2 mRNA upstream 480316 965498 ~ 994785 (+) True jak3
XM_034306746.1 mRNA downstream 13834 1515223 ~ 1538854 (+) True qsox1
XM_034306820.1 mRNA downstream 61360 1562749 ~ 1580727 (+) True lhx4
XM_034306566.1 mRNA downstream 126689 1628078 ~ 1693853 (+) True xpr1a
XM_034306844.1 mRNA downstream 199599 1700988 ~ 1726361 (+) True sin3b
XM_034306302.1 mRNA downstream 225419 1726808 ~ 1753281 (+) True def6a
TU147818 other upstream 128516 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 368814 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 658444 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 302108 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 375652 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 714713 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2593880 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2719295 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile