RNA id: XM_034306746.1


Basic Information

Item Value
RNA id XM_034306746.1
length 3663
RNA type mRNA
GC content 0.50
exon number 12
gene id qsox1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1515223 ~ 1538854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagctctgaagttttctgtggtgtgtgtgtgtgtgtgtgagtgagagagagtgtgtgtgagagagagagagagagagagagcagaaatgGCGGCGCGCGCTTCCCCCGCCACGTCTCTCTCTCGGTGGAGGATGTGCGGGACTGCGGCGGTGCGCGTGCGGCTCGTGTGCGCGGTGCTGTGCGTGATGTGCGTGCTGTGCAGCGGCGGGGTTCGGGCCGGTCTGTACTCGGAATCGGATCAGGTCGCCATCTTGAGTCCTGACAATGTGGATGCGGTTCTGTTTAACTCCCCTTCCGCAGCGCTGCTCGAGTTTTACGCCAGCTGGTGCGGCCACTGCGTCGCCTTCTCACCCGTGTGGAAGAAACTGGCCCTGGACATTAAAGAGTGGAAGTTGGCGGTGTATTTGGCGGCGATCGATTGTGCCGATGAGTCgaacagagcagtgtgtgtgagattcgGCATCACAGGATATCCGTCTCTGAGGTTTTTGCCAGCGTTCTCCAGTAACGATTCTACAGGTGAAGATCTCAGAGgcttcTCCCGTGATGTCGCAGGCCTCCGTCACCTCATTATTGATAAACTGGAGTCTCATAAACACCCCGGACCACCGGCGTGTCCCCCACTGGAGAAAACCAGtgcTCGAGAGATCGACAGTTATGTGGAGAACAGCAGAGGGCAGAACCTGGCGCTGGTGTTCGAGGAGGACGACTCCTACGTGGGCCGAGAGgtgatCCTGGACCTGCTGCAGTATGAGAACATCACGGTGCGGCGTGTGTTACGCTCGGAGGAGGAGCTCGTGTCTCGACTCAGTGTGACGGATTTCCCTTCTGTTTAcctgtacaaaacacacaccaacttTACCAGACTGCCAgtgctgaaAGAAGCTCGTGCGTTTTACTCGTACGCCCTCCAGAGGTTACCCGGTGTGGTGCGAGAGGGAAAACCTCGTCCTGAAGTGAGCGACTTCATCAGGAACGAGACGGAGGAGCAGTGGAGGCCGTTCAacaagacacgTGTGTACATGTCTGATCTGGAATCTGCTCTGCATTACTCTCTCCGAGTGGAATTAGCGTCTCATTTGGTCATTAGCGGAGAAGCTCTGATCGCTCTCAGAGGCTACGTCTCTGTACTGGACAAgtatttCCCAGGCAGGCCTCCTGTGAAAAATGCTTTAAAGGCGGTGAATGATTGGCTGCAGAAGCAGAAGGTAACATCGATCAACTACAGCGACTTCAGAGAAGCTCTGGACACCACGagcgCTGACTCATATCTTCCTAAAGCTGTGAGGTGGATGGGGTGTCAGGGTTCGAAGCAGCACTATCGAGGTTATCCCTGCGCAATGTGGACGCTCTTCCACACACTGACTGTCCAGGCCCTAGAAACAGAAAGtaaagacccGCAGGAGGTGCTACAGGCGATGAGGCGGTACGTCAGTAGTTTTTTCGGCTGTCGTCCGTGTGCAGTTCATTTTAAGAACATGGCTCAGGAGAGTATGGATAATGTGAACTCGCTAAGGGCTGCAGTCCTCTGGCTCTGGTCTCGCCACAACCGAGTCAACGCCCGCCTCGCAGGTGAACTGAGCGAGGATCCTCACTTCCCCAAAGTCCAGTGGCCTCCTCCGGACCTCTGCCCGGCCTGTCACAGCCTGAAGCCCGGCGGAGAGCACACCTGGCTGCAGGACGAGGTGTTAGCCTTCCTCAGGAATTATTACTCCGCCCAGCACCTCTTACACGACTTCCTGTCTGACGACATCGCACCACCGCTGACGGAGAGACGCAAAGCCAGGGAGGCGGTGCCAGTGCAGGAACAGGAAGCAGGAGGGGaagtggaggaagaggagatggTTGAGGAAGTAGACGGAGCCCCTCAGGATGAAAAATCGGCGTCGGAGGCGCTCCCGCGTAAGCCGAGCATCGTCGGGCTCAGGCTCCGTCAGTTCAGAGAGGACATCGTGGACCTGGACTCCTTCATCGTCCAGCACTACAAAGCTAAAGCGCCGCTGAAGAGGCAGGACACGGAGGATGAACAACACGTGAGGAGGACCAAACGTGATCTCGCTGCGCAGGAGGTGGAAGGGTTGGCGCTGGAGATGGAGGCGGAGCCTGAGCCGTACGGTCATTCTCGGAGTACGCGCTGGATGTTCGTGCTCAGTGTCGGGTTCTCACGGCTGGACGTGAGTCTGTGTGTGACGCTCTACCTGCTCTCCACGCTCTGCATCGTCGCCATGTGCCTGTACTTCAGAGTGAAACGGCGCCAACGCAGGACAAAAGTGGCACTGCCGTAACCGATACGAACCACAGAACGGACCAGTGACACGCTcagataaaataaatcacataaaaaCTGGATGAAAAGAATAATCAGCACACATGCTGTAATTTCACCGCCATGTTGATTCGTCAATTAACCTTTTAGCTAGGCACGGGGGCGGAGTTTCCTAGCATAGCATTACTGAGCCAACACCTGCTGCTAGTTAGCACAGAACGCCATAAAGTCAGCCACCGAGGTGCTCGACAGCTTTATCTCTTTTGTCACCAAAATCAAGGAATCTCTGGAAGTCCTCATAAAAATTACACTTATGATGTAGGATTGTGcgatattatttttttcctgtgtgcgatttaccatttttttaaaaaaaatcatgataaaacataaatattccATAGCCTTACGTATGTCGATTGGCTGACATACTGGTTTTtgctcttttggtgtatttttgaatGATAATGTGTACTAGCGCACTCCAAAGATAAAATGCGTAAAATGTTTCTACACAAAAAAACGCATAAACatggtctggtaatataattgGAGTAAACGTCACTAGATATCGTGGCAGTGTAATATCGTTCAGGGACGATAATATTGTTGTATCGCACAAGCCTATTATGATATTTaacagttgttttatttttatgtacagTGTAAACAACGTAAAATTTCAACGGTACATTTTACGTATGCTGTAAATGTTACTAGTGTAATAATATTGTATCGTAGATCTACAACAGCTCCAGTTTTCCGTGTCTAGCTACCAAAATATATGtgacataagaaaaaaaaaaaacaaaggataTTAGCAGATAACGTTGAATAAAAAACGTAAATCAGAGATATTCTGCCGGAGTGGCCGACTTTTCAGCGTTCTGTGCTCGCTGACGTTCATGTAAATGACAGAAagatgtaaattgtaaatgaaGGAATATGAATATCACCGCAGCAAGATTTCCGAGTCCTTACTGGCGTCTCGGATCATTTCTGCTGAAGTTGCTCCTGCTTGCTTGGACGTGATCGACCGAATCAAAAGCACTGACGCTTCTAATCATCCAGCTATTTTATTTCTCACCTCAGCCCAAGCAGCAGCGTCGGCTTGAGTGGTGTAAACCGTGTGGCCTAACAGGATTTCACAGAAtcatacaataaataataaatacttgaATGTTGTGGGGGTGTGGTGTTCACGGCAGTGGGCGGAGTTAGCGCTTGTAGCTATAATTTCAACCAAAATCCAGTGAATATACTGTAGAATTCCAGCTGTGACGATATATCAGTGTATATCACATTGTATCATGATacacaaatcacaaataaaatCGATTTCATTCTGAATGAATCTGTAACAAATAAACCACAATAAACATTCTGCCTCGGTGGAA

Function

GO: NA

KEGG:

id description
K10758 QSOX; thiol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147856 lncRNA upstream 7948 1505026 ~ 1507275 (+) True G125089
TU147861 lncRNA upstream 11499 1479307 ~ 1503724 (+) True G125094
TU147817 lncRNA upstream 171303 1340886 ~ 1343920 (+) True G125061
TU147775 lncRNA upstream 209078 1305720 ~ 1306145 (+) True G125031
TU147673 lncRNA upstream 286167 1228289 ~ 1229056 (+) True G124947
TU147866 lncRNA downstream 4982 1543836 ~ 1592893 (+) False G125098
TU147867 lncRNA downstream 6840 1545694 ~ 1592893 (+) False G125098
TU147865 lncRNA downstream 53129 1591983 ~ 1592893 (+) True G125098
TU147885 lncRNA downstream 78766 1617620 ~ 1618870 (+) True G125116
TU147886 lncRNA downstream 82403 1621257 ~ 1623005 (+) True G125117
XM_034306739.1 mRNA upstream 13834 1475101 ~ 1501389 (+) True cep350
XM_034306741.1 mRNA upstream 13834 1475101 ~ 1501389 (+) False cep350
XM_034306740.1 mRNA upstream 13834 1475101 ~ 1501389 (+) False cep350
XM_034306743.1 mRNA upstream 13834 1475101 ~ 1501389 (+) False cep350
XM_034306742.1 mRNA upstream 13834 1475101 ~ 1501389 (+) False cep350
XM_034306820.1 mRNA downstream 23895 1562749 ~ 1580727 (+) True lhx4
XM_034306566.1 mRNA downstream 89224 1628078 ~ 1693853 (+) True xpr1a
XM_034306844.1 mRNA downstream 162134 1700988 ~ 1726361 (+) True sin3b
XM_034306302.1 mRNA downstream 187954 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA downstream 188005 1726859 ~ 1753281 (+) False def6a
TU147818 other upstream 168638 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 408936 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 698566 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 264643 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 338187 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 677248 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2556415 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2681830 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile