RNA id: XM_034306758.1


Basic Information

Item Value
RNA id XM_034306758.1
length 4296
RNA type mRNA
GC content 0.54
exon number 31
gene id fkbp15b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27678915 ~ 27698868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATCAGTGGAAACCGGAAGCTGAAGGGAAGTTTAGCTCCGATGGTTCTTCTCCGGTGTTGCTTCTGATCACGTTATTTCGCGGTTTTAATTGAGTGTTTTCTGATTAAATGTGTATATTACGGTTCTGTGGGTGTTTGCAGCACTGAGACGGAGACATGTTCACTGCTGACGATGAAGACGGAGATTTCATGTCTCCTACAGGAGGgGCAAAATTAGCTTCTCTGTTCAGCTTGGACCAGACGGCCAACCAGGCCAATGAGTCGTTCCAGTACACGGCCCCCAAACAGCCTCGTAAGAGCTCAGGTCCACCTGCTCAGAAAGCCGCTCCTCCTCCCGGATCACCTGCTGTGCTCTTCGCCACGGCCGTTCACGCCTACAGATATGTTAATGGACAGTATGTGAAGCAAGGCAAGCTGGGAGCTGCAGTGTTAGGAAAGCACACGAACAAGGAGTATAAGCTGCTGCTGTACGCCAGCCAGCAGAAACCAGTGACGGCGGCCAGGATTCACTCAGCCTTCTCCTTCACTGTCCAGCCCAGTAACTACTGCACCTTTTATGATGATCAGAGGCAGAACTGGTCTCTCATGTTCGAGTCGGAGAAAGCAGCCACAGATTTCTGCAAAGAGGTGTGTCTGGCTAAAGCGAACAGCACTTCTCCTCTGGACATGCTGGTGATTCAGGACCTGGTTCTCGGGGAGGGTCAGGGTGTAGAGAACGGAGACTCTCTGGAGGTAGCCTACAGCGGCTGGCTGCTGCAGAACCACACCATCGGCCAGATGTTTGACTCTAATCTAAATAAGGACAAGCTTCTGAGAATGAAGCTCGGTGCTGGAAAAGTCATTAAGggctGGGAGGAGGGCATGCTGAACATGCGTAAAGGAGGACGCCGTCTCCTTGTGATTCCCCCGGCTCTGGCGTACGGATCGCAGGGCGTCCCGGGCCGAGTCCCTGCAGACAGCACTTTGGTGTTCGAGGCAGAAATTCGTAGGgTGAAGTTTGCTAAAGAAGCCGGATCTGAGAGGACGGCCGTGAGCTCCAGGGACACCGCTGTCCCCTCTCCTGTCCCCTCTCCTGTCCCCTCTCCTGTCCCCAGCGTGGAGAGCCTGGGGCTGGATCTCACCTCAGCAGCCAGCAGATCAGGtgaaCCACCTCTAAGAGCTAAATCCAACTCACTGAGTGAGCAACTAGCAAATCCGGATGCAACCAAAGCCAAGCTCATCTCCCGCATGGCCAAGATGGGTCAGCCCATGTTGCCCTTCCTCGCCGGTCCAGCATCATCGTCCTCACAAGCCGAGTCCAGCGACTCTGAACTGGAGGACCCGAGTGTGTCCCGATTGAAAGAGCGTCCTCCTGCACCCTCCCCTCAGCCAGTCCACCTCACATCTGGTCCTTCAGCCTCACTACAGGCCACAGCCTTGATGcctgtttccatggcaacagccAATCCCCAGCCTGTGATGCCCATGGCAGGTCATGGCTTCCAGCCGTACTCTTACACTCAGTCCACTACGGCTCCCTCTCACTTACAACCGGTGGGACAGATTTACCCTTCACAGACCGTGCCTTaccaagGaagtggtgatgtcacatcctTCTTGATGACAGAAGCCCGGCAGCACAACACCGAGATCCGAATGGCCGTCAGCAAAGTGGGAGATAAAGTGGACCAATTAGCTTCCAAGGTCGAGGAGCTGCACAAGCAGGGCGGGCTCTCTCTGGGCTTGTCCAATGTCTCCATGGATACGGCGATGATCATGCACACCATCCAACGCATCATCCAGgaaaacgAGTGCCTGAAGAAAGAGGTGTTTGAGAAAAGCTCGCGCATCGAAGAGCAGAACCGCAAGATCGGAGAACTCATCCACCAGAACCAGAGgtgcatgGAGCAGAGTAATATGCTTATGGAGCAGCGGAATGACTCTCTGAAGAACTCGAGTGAGCAGAACCAGGCACGAATACTGCAGGCAGAACAGGAAAAgcatgcactgccACAGGACATGGGCAGGAACCAGgcgAGGTTGACGGACGAGCTGGCCAGCGCTACAGCGCGGGTGTCGGAGCTGCAGTTGGAGCTGACTGCACAGCGTCAGAAAGCAGCGGCGCTGCAGTCGAGCCTGAACACCGCCCTGCAGGAGGGACAGCAGCACGGCGCACAGCTCACGGCTACGGAGAACCAGCTGCAGGaGATGAAGGAGTTGGCAGAGCGGGTGCAGGTGCAGTACAGAGCTGAGAAGCAGAAGCGGAAGGAGGTGGAGCTGAAGCTGAGTAACCTGGACGAGGAGCTGCAGGACTTgaagagcgagaaagagagtcTGGAGCGAactctGTCAGACAGGAAGAAGAAGTGGCAAGCGGAGAGGCAGCGCTGTGATGAGGAGTTGGAGGAGGTGAGGAAGGCCAGTCAGATGGAGATGGACCAACTCCGGAGTCAACTGCGTAAAGCCCGGACCAACACAGACCAGGCAGCTGCTGAGCAgttaGCACAGCTGCAGGCAGATGTGGAGGCAGCTCTGGCTTCAGCACGagaacaacagAAGAGAGAAGTGACAGAGCTCACGGAGCAGAgagacacactgcagctcaaacTCTCACAGCTACAGgacaagttctctGCTATGAAGCAGtccagagaggaggaggagcaacGGTTACTACGCCAACAAGACCAGGGGGAGGAGCTTCAGGCCCTGAGAGATAAGTGTTGTGAGTTGGAGAAGAGGGCGGAGTCACTGAGGCAGCAGGGAGAGACGCGAGTTGCAGAGCTGGAGAGGAGACTGGCAGAGCAGCGGCAGCAAACAGACACTACAGGAGAggtgaAGCGTGTGATGAATGGAGTGTTCCAATCTTTACGAGGGGAGTTCGAGCTCCATGAGACGTACACCGGCAGTGTGGTGCTGGGCGTGCTGGTCAACACCATTAAGAGCGTCACCCTGCAGCTGCTCTCGAAATCTGAACCGTCCTCAACTGAGAATAACGAgaaagaggaggatgaagatgaagaggaggaagagaaggacaGCAGGAGTGAAGTGCAGCCCGAAGAGCAGGAGAACCACGCAGAGGAGTTACATATGAACGGAAAGAAAGAAGAtgtggaagaggaggaggaagaggaagatggTGACCAGATGCAAGtgacaggggaaaaaagtaaagaacCAGAGACGGTGGAGGAGGACAAGGAGGATGAGAAGGGTGGACAGGAAGTCGTCAGAGGTAACGAGGAAGAGAAGGTTGAACAGGAAGTCGTCAGAGTTAAACAGGATATGAAAGGTGAACAGGAAGTCGAAGGCACTAAAGAGGAAGTGAAGGAGACAGGAAAGGAATCGGATAGCCTTGAAGCCGACGGTGAGAACCGAGGAGAGCCCGTGCAGTCTGACATCACATCACAGATTCAGACGCAGAATGATGTCATTCCCAAAGAGGAAGTGAATGTAGGTCCAGTCGGTGACATCACACCTGAAGAGGAAGTGGTGGCTAAGAGTGAGAGCACTTTGGGTCTGTCAGATGAGTCGGAACCGGATGAAACCATTCACACCGGACCCCCGAAGAACCCCCCACCACCCCCAAACCCTGCAGAAGAGGACGGCACAGAAACGGTACCACAGCCCAGCGGTCCATCTGAGCGGGCACAAGGGGTGAATTCAGAGGAGCCATTTTTCCAGAGCCCCGCCCCGACTAAACCTCCACCACTACCAACCagtgaggaagatgaggaggaggaggagctgAGTTTAAAAGGACGGCCCCCTCCCGCCCCTCTGTTTGGAGACGACAGTGATGACGACGATCTGGACTGGCTGAGCTGACTTTCACCCTCAACCAAGAACCAAAACCACCACCGCCTGTCTCCTGGGTAACGGTTCCCATTGGGAAACAGACACCATGGAGACGGAACTCGAGAGGGATAAAGGAAGCAGCTAGGCTGGAATCTGAAGCTCCGCCTCTTTTCCCAAACTCTTCACTGTTGTCCATGTTTCCAAAGGAGAGCAGCACTTCCTGGAATTAGTCTGACTGGAAATCCATTTATAACTCAATCACACATTAATCTCTCAATCTAGATTTCATTTGTAGCCTGAAACGTGACCATGAaatgattacacactttttaaagaCGTTTTAATGTGCCAGAACTCGATTGCTCTGAATCAGTGGTTTAGTGGACGAGGGTAATAACGGTCATGACAGTGTGGACTAGCTGCTGTATGCATGTGTCTTAAGGCTTGTATCCTTTATTAGCAGAAAGGTATTCTggattaatataataaaagacGAGCTGGCTAATCTTCTAAAA

Function

GO: NA

KEGG:

id description
K17478 FKBP15, WAFL; FK506-binding protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165554 lncRNA upstream 67580 27610947 ~ 27611335 (+) True G140170
XR_003404686.2 lncRNA upstream 68355 27603917 ~ 27610560 (+) True LOC113546137
TU165143 lncRNA upstream 109830 27560390 ~ 27569085 (+) True G139807
TU165111 lncRNA upstream 188454 27439761 ~ 27490461 (+) False nr6a1a
TU165108 lncRNA upstream 189669 27428636 ~ 27489246 (+) False nr6a1a
TU165666 lncRNA downstream 73576 27772444 ~ 27773644 (+) True G140236
TU165668 lncRNA downstream 75869 27774737 ~ 27851332 (+) True G140237
TU165687 lncRNA downstream 145026 27843894 ~ 27859701 (+) False dbnlb
TU165680 lncRNA downstream 231855 27930723 ~ 27942087 (+) True G140244
TU165672 lncRNA downstream 232342 27931210 ~ 27935818 (+) True G140240
XM_026945801.2 mRNA upstream 77459 27598414 ~ 27601456 (+) True tubb2b
XM_034306400.1 mRNA upstream 90511 27581808 ~ 27588404 (+) True fgf17
XM_034306401.1 mRNA upstream 90511 27581808 ~ 27588404 (+) False fgf17
XM_034306402.1 mRNA upstream 90511 27581808 ~ 27588404 (+) False fgf17
XM_026945915.2 mRNA upstream 148007 27510703 ~ 27530908 (+) True nr5a1a
XM_026945829.2 mRNA downstream 123669 27822537 ~ 27831378 (+) True ube2d4
XM_034306669.1 mRNA downstream 139377 27838245 ~ 27859702 (+) False dbnlb
XM_034306670.1 mRNA downstream 139377 27838245 ~ 27859702 (+) False dbnlb
XM_034306668.1 mRNA downstream 139378 27838246 ~ 27859702 (+) True dbnlb
XM_026945807.2 mRNA downstream 139379 27838247 ~ 27859702 (+) False dbnlb
TU165116 other upstream 249438 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 949084 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1112152 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1201456 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 1202038 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 320603 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1789105 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1789681 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1790474 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1790652 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile