RNA id: XM_034306808.1


Basic Information

Item Value
RNA id XM_034306808.1
length 1216
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC117597842
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19501493 ~ 19502708 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATATACACAATACCCCTATATCTATGAAGTCTATAATCCCCATTAAAAACTCAAGCCATTTTGCAGTGTCTGCATTCATTGATCACAGGATCAGTAAAGCTATTCGAGTTATCAgcataataaaaagaaacagcatGCAGCCACTTTATTGCGTCTACTGCAACAATGGCAAAGCATGCAGGTTTACTAAAGCTAGAATTGAGATACACAGTGATCATTTTGATTTCCCATTTGGTGCTTCAGATGTGCTGTGCCAGGGCAACCACACCCAAAATGCGACTCATGTTGCCATTTCAGCTGAAATTTCAGACATTAATTACCTAGACTTCCTGCCAGTAAAGAACAGAGTGAATAATGAATCATTAAAGTACAACTTCACCATCTGTATCTCAAGCCTTTTTGGGGACTACAATAATGTTCTGCAGTTTGCTCAAAGCATGGAGATGTACAAGCTTCTTGGTGTCCAACGAGTCGTAATCTACAACACCAGCTGTGGTTCTGACTTGGACAAACTCCTACAGCACTATGAGAAAGAAGGAATTCTAGAGATTGTGCCATGGCCTATTGACCAGTTCCTTAATCCATCTGCAGGATGGAATGGCAAATTGCATAAAGGGGAACTCCAGTACTATGGCCAGTTGGTAACACTCAATGAGTGCATTTATAGACATATGTATCAGTCCAAATATGTCCTGTTGAATGACATTGATGAGATCATCATGCCCTATAAATATGCTAACCTTGCTTTACTGATGGAGGATCTGCAACAGGAGCATAAAGATGTGACTGTATATCTCATAGAGAACCACATATTCCCCAAGATGCAGTTTGAAGAAAGTGGCAAGTTTTGCAGGCCAGAATGGAAAAATATTCCTGGTATCAATATTATGGAACACATTTACAGAGAACCAGACAGAAAGAACATCTACAACCCCACAAAGATGATCATCAACCCCAGGAACATGCTGCAAACCTCAGTGCATTCCAGCCTGCAACACATTGGAAAGGTCTATCGGGTTCCTCCCGATGTGTGTAGGATCATTCATGTGAGAACACCACTACAGAGGAGTCTTACCAAGGAGCAATTATTTGTTGACACAAGAGTGTGGGACTTTGCACAAGAGCTGATAACAAATGTTAATAGGGCACTAAAATTATCAGGTTTGTTGAAAAGTCAAGAGTGAtatgggttttttgtttgtttgtttttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159840 lncRNA upstream 15036 19485898 ~ 19486457 (+) True G135309
TU159822 lncRNA upstream 16559 19408554 ~ 19484934 (+) True G135292
TU159680 lncRNA upstream 178222 19321962 ~ 19323271 (+) True G135169
TU159675 lncRNA upstream 231825 19269334 ~ 19269668 (+) True G135164
TU159609 lncRNA upstream 546292 18949227 ~ 18955201 (+) True G135101
TU159873 lncRNA downstream 55526 19558234 ~ 19559272 (+) True G135341
TU159898 lncRNA downstream 112167 19614875 ~ 19615657 (+) True G135363
TU159884 lncRNA downstream 116607 19619315 ~ 19627828 (+) True G135352
TU159885 lncRNA downstream 122596 19625304 ~ 19698739 (+) True G135353
TU159931 lncRNA downstream 201554 19704262 ~ 19704467 (+) True G135393
XM_034306343.1 mRNA upstream 11935 19484175 ~ 19489558 (+) True LOC113533274
XM_034306355.1 mRNA upstream 81555 19418750 ~ 19419938 (+) True LOC117595725
XM_034306323.1 mRNA upstream 97448 19398738 ~ 19404045 (+) True LOC113533125
XM_034306322.1 mRNA upstream 98476 19398738 ~ 19403017 (+) False LOC113533125
XM_026925139.2 mRNA upstream 111831 19270626 ~ 19389662 (+) False ralgps1
XM_034306334.1 mRNA downstream 75294 19578002 ~ 19598056 (+) True map3k12
XM_026925147.2 mRNA downstream 168713 19671421 ~ 19682627 (+) True stac3
XM_026925146.2 mRNA downstream 169798 19672506 ~ 19682627 (+) False stac3
XM_026925225.2 mRNA downstream 221314 19724022 ~ 19730524 (+) True LOC113533240
XM_026925227.2 mRNA downstream 221314 19724022 ~ 19730524 (+) False LOC113533240
TU159255 other upstream 1039559 18436210 ~ 18461934 (+) False pbx3b
XR_003403426.2 other upstream 1452604 18030975 ~ 18048889 (+) True vdac3
TU158711 other upstream 2204610 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 2766158 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 2900908 16580453 ~ 16600585 (+) False mtmr3
XR_004578531.1 other downstream 719707 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 719707 20222415 ~ 20442191 (+) False LOC113533440
XR_004578532.1 other downstream 719707 20222415 ~ 20442191 (+) False LOC113533440
XR_004578534.1 other downstream 719707 20222415 ~ 20442191 (+) False LOC113533440
XR_004578535.1 other downstream 719707 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile