RNA id: XM_034306816.1


Basic Information

Item Value
RNA id XM_034306816.1
length 2161
RNA type mRNA
GC content 0.50
exon number 16
gene id slc5a5
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 940542 ~ 960999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtatgtgtgtgtgttttcacagctgaagctgcagtgtgtgaggagaaTCAGAATGTCAGCGGCTATAACAGACAGGTTGGGCTTCACTGTGGGAGACTATGCTGTGTTCGGCGCCATGTTGGCCGTCTCCATGTTTATCGGCGTATTCCAGTCTCTGCGCTCACGTGGGCGGAGCTTCTCAGATTCAAACACAGTGGAGAATTTCTTCATGGGAGGGCGGAGCCTGGGGGCGGTACCAGtgggtgtgtctctgtgtgcaaGCTTCATGTCGGCCGTGCAGGTGCTGGGGGTTCCGTCTGAATCATACCTGTACGGCTTCAAGTTCCTCTACATGTGTTTGGGGCAAGGCATCAACTCCTTCCTGACGGCCACACTGTTCCTCCCTGTGTACTACAGACTGACCATCACCTCCtctaaccagtatcTGAGGATGAGGTTCGGCAGAGGAATGCAGCTGCTTGGGAGTCTGCAGTTTCTTATAGCCACACTCCTCTACACTGGCATTGTTATCCTTGCTCCTGCACTCATCCTAAATCAggcTACAGGCTTGAACATGTGGGCGTGTCTGATCTCCACCGGACTCATCTGTACGTTCTACACAAGTGTGGGCGGAATGAAGGCCGTTGTGTGGACAGATGTGTTTCAGGTCGTCGTTATGCTTTTGGGTTTCGTCGTTACCTTCGTTCACGGCACTGTCCTGGCAGGAGGACCAGCCAGAGTCCTGGAGATTGCCAACAACGGATCACGCATCAACTTTAACGAttttGGGTTGGATCCTCAGAGGCGGTACTCGTTCTGGAGTTTTACAGTCGGAGGGACGATGGTGTGGTTGTCCATGTACGCAGCGAATCAGGCTCAGGTGCAGCGCTACATCTCCTGCAGGACGGAGAGACAAGCAAAGTGggctTTGTTGATCAATCAGGTGGGTTTGTGTCTGATTGTGAGCAGCGCAGCTACATGTGGTATGGTGATGTACGCTCTTTATTCACACTGCGATCCTCTCAAATCTGGTCGAATCTCTGCACCGGATCAATACATGCCGTATTTCGTACTGGATATTTTTCGGGAACTTCCTGGATTTCCCGGACTTTTCCTCGCCTGTGCATACGGAGGAACGTTAAGTACGGTCTCGACCAGCATTAACGCCATGGCTGCGGTTACGATGGAGGATCTGCTGAAGCCGTTTCTGATCGACTCGTTAGAGAGGAAACAGATTCAGCTCTGCAAGTTACTGTcgTTTCTGTATGGAGTCGGCTGCATCATAACGGCAGCTCTCTGCTCTCTCCTGGATTGGGGAGTTCTGCAGGGCTCGTTTACAGTAATGGGCGTGGTTAACGGGCCGCTCCTGGGCACTTTTATCCTGGGTATGTTCATCCCAGCTGCAAATAAACCGGGTGCGTTTGCCGGCGTGGCGGTGGggttctctctcgctctgtggCTCGCTGTTGGAAGCTCCATTTATCCTCCAACCCCACAGAGAATGGGTGTGTTACACACCAGCGCAGACTACTGCCCTTCagctaacattacacacaacTCCACCATGCTAACAACACCATCACCTACGCTGTCACCTCCAGGACCTGCAGAGAACCGGCATGGTGGTCTTCAGGATTTTTACTCCATATCTTACCTCTACTTTGGAGCTCTGTCCACTGGAGCATCTGTGCTAGTTGGAATAGTGGTTAGCTACCTAACAGGACCGACACAGAGAGGCTCCATCCAGCCTGGTTTGCTGTGGTGGGATCTGAAACCTCACCGTGATGCTCCTCAGGAAAGCACAGGTGAATCGATGACCCTGAATCCCACCATCGTCCTTCTGAACCCTGAGAAAGACGTCGATAAAGAGCAaaaatctgtatctgttttgtGAGGAACGTTTGTGTTGGTTGTGTATTTAGAAAAGGACATGTGTCtttatgaatgtgtgttttatattttcaaatacaACCAAATCCTCACAGTGGGATGAATAATTCTTCCTTCTgttgatttctctctctctctctctctctctctctctgtgactgCGACAGACACAAACCCACAGACATTTAATGTCTAACATTCCGTACATTCCTCATGAGACCTGAATCAATAGCGTTGATATTCttatctttatttaaatatgcttCAATCAGCACATTTCTGACACACCT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14385 SLC5A5, NIS; solute carrier family 5 (sodium/iodide cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147247 lncRNA upstream 17418 922619 ~ 923124 (+) True G124643
TU147184 lncRNA upstream 119202 818822 ~ 821340 (+) False dennd2da
TU147182 lncRNA upstream 132697 807190 ~ 807845 (+) False dennd2da
TU147139 lncRNA upstream 212659 691007 ~ 727883 (+) True G124556
TU147136 lncRNA upstream 248296 687106 ~ 692246 (+) True G124553
TU147586 lncRNA downstream 33853 994852 ~ 995170 (+) True G124874
TU147613 lncRNA downstream 103602 1064601 ~ 1065080 (+) True G124895
TU147640 lncRNA downstream 152055 1113054 ~ 1114384 (+) True G124918
TU147646 lncRNA downstream 230076 1191075 ~ 1201926 (+) True doc2d
TU147647 lncRNA downstream 233062 1194061 ~ 1201926 (+) False doc2d
XM_034306580.1 mRNA upstream 119175 780081 ~ 821367 (+) True dennd2da
XM_034306579.1 mRNA upstream 163056 759301 ~ 777486 (+) True LOC117597816
XM_034306319.1 mRNA upstream 182006 726792 ~ 758536 (+) True spag17
XM_034306320.1 mRNA upstream 182006 726792 ~ 758536 (+) False spag17
XM_034306576.1 mRNA upstream 281979 651403 ~ 658563 (+) True cept1a
XM_026911599.2 mRNA downstream 4499 965498 ~ 994785 (+) True jak3
XM_034306586.1 mRNA downstream 142716 1103715 ~ 1112067 (+) True lonrf1l
XM_026928160.2 mRNA downstream 194414 1155413 ~ 1200518 (+) False doc2d
XM_034306658.1 mRNA downstream 285531 1246530 ~ 1255935 (+) True LOC113535335
XM_034306659.1 mRNA downstream 296444 1257443 ~ 1263654 (+) True LOC117597828
TU147176 other upstream 123885 777964 ~ 816657 (+) False dennd2da
TU147173 other upstream 123885 792519 ~ 816657 (+) False dennd2da
TU147174 other upstream 136739 780019 ~ 803803 (+) False dennd2da
TU147159 other upstream 234685 704589 ~ 705857 (+) False G124565
TU147636 other downstream 142736 1103735 ~ 1106287 (+) False lonrf1l
TU147818 other downstream 383337 1344336 ~ 1346585 (+) True G125062
TU147915 other downstream 842498 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 916042 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 1255103 2216102 ~ 2232140 (+) False alkal1

Expression Profile