RNA id: XM_034306820.1


Basic Information

Item Value
RNA id XM_034306820.1
length 1261
RNA type mRNA
GC content 0.56
exon number 6
gene id lhx4
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1562749 ~ 1580727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtttttatcagagcggatgaaaatgatgcaaaGCGCCGCCGTGTTGCCCAGCGAGAGCGCCGTGAAGCCCGACATGCTCGTCCCACTGCAGCagGTCCCGGAGTGTGCGGGATGTAACCAGCGTATCCTGGATAAGTTTGTGTGTAAGGTTCAGGATCTGCACTGGCACTCCACCTGTCTCAGGTGTGCGGAGTGTGACGAGCTGCTGAGTGACAGGTGTTACTGCCGAGGAGGACACGTCTACTGCAGAGAGCACTTCTACACGCGTTTTGGGACCAAGTGCGCATCGTGTCAGCAGGGCATCCCTCCTTCTCAGGTGGTGCGCAAAGCGCAGGACTTCGTTTATCACCTGCACTGTTTctcgtgtgtgatgtgcagcAGACAGCTGGCCACCGGAGACGAGTTTTACCTGATGGAGGACGGCCGACTCGTCTGCAAGGTCGACTACGAAACCGCAAAACAGAACGatgaCTCAGAGTCAGGAGCAAAGCGTCCTCGCACCACCATCACGGCCAAACAGCTGGAGACGCTGAAAAGTGCGTATAAAAACTCTCCTAAACCCGCACGGCACGTCCGAGAGCAGCTCTCCTCCGAGACAGGACTCGACATGCGCGTAGTACAGgtgtGGTTCCAGAACAGACGAGCGAAGGAGAAGCGTTTGAAGAAGGACGCTGGACGCCATCGCTGGGGTCAGTTTTATAAAAGTGTTAAGCGCAGCAGAGGAGCGGCGAAGGTGGAGAAGGAGAGCTCGGCCGAGGATGGAGGGATCAGTGACAGCGAGCTCAGCTTCAGAGACGATCAGATCTTGTCGGAACTGGGTCACGCTAACGGCCTGTACGAGAGCGTCGGGGACGTTTCCGGCAGCAACATGATGAACAGCGGTTTCTCGTTAGAGGCGGCGAGTCCTTATTCGCCCTCGTCCATCAGCTCGCTGCCTGGACACGCCCACCTACTCGGAGGCGTCGCCTTCAGCATGGAGGGGCTGGCAGGAGCGGCAGGTCAGCCGCTCAGAgccgtgacctctgacctctccaCAGGCAGCAGCACCGGATACCCAGACTTCCCCACAAGCCCCGCCTCCTGGCTGGATGAGATGGACCACACCCAGTtctgaggtcaaaggtcatatGGAAAAGACATGAGGAACAAAGGAGCTTCTGGAGTCTTTTTTTCAGACGTTGTGATTTTAGTCTAGCGCAGTTctaaggtcaaaggtcatgaaGTCAAgacgtaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09374 LHX3_4; LIM homeobox protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147856 lncRNA upstream 55474 1505026 ~ 1507275 (+) True G125089
TU147861 lncRNA upstream 59025 1479307 ~ 1503724 (+) True G125094
TU147817 lncRNA upstream 218829 1340886 ~ 1343920 (+) True G125061
TU147775 lncRNA upstream 256604 1305720 ~ 1306145 (+) True G125031
TU147673 lncRNA upstream 333693 1228289 ~ 1229056 (+) True G124947
TU147865 lncRNA downstream 11256 1591983 ~ 1592893 (+) True G125098
TU147885 lncRNA downstream 36893 1617620 ~ 1618870 (+) True G125116
TU147886 lncRNA downstream 40530 1621257 ~ 1623005 (+) True G125117
TU147893 lncRNA downstream 105592 1686319 ~ 1696261 (+) True G125119
TU147909 lncRNA downstream 181577 1762304 ~ 1763325 (+) False G125129
XM_034306746.1 mRNA upstream 23895 1515223 ~ 1538854 (+) True qsox1
XM_034306740.1 mRNA upstream 61360 1475101 ~ 1501389 (+) False cep350
XM_034306566.1 mRNA downstream 47351 1628078 ~ 1693853 (+) True xpr1a
XM_034306844.1 mRNA downstream 120261 1700988 ~ 1726361 (+) True sin3b
XM_034306302.1 mRNA downstream 146081 1726808 ~ 1753281 (+) True def6a
XM_034306303.1 mRNA downstream 146132 1726859 ~ 1753281 (+) False def6a
XM_026928023.2 mRNA downstream 174798 1755525 ~ 1759336 (+) True ndufb11
TU147818 other upstream 216164 1344336 ~ 1346585 (+) True G125062
TU147636 other upstream 456462 1103735 ~ 1106287 (+) False lonrf1l
TU147176 other upstream 746092 777964 ~ 816657 (+) False dennd2da
TU147915 other downstream 222770 1803497 ~ 1806790 (+) True si:ch211-229n2.7
TU147950 other downstream 296314 1877041 ~ 1931418 (+) False LOC113535242
XR_003403572.2 other downstream 635375 2216102 ~ 2232140 (+) False alkal1
XR_004578620.1 other downstream 2514542 4095269 ~ 4101689 (+) False si:ch73-233m11.2
TU149628 other downstream 2639957 4220684 ~ 4278077 (+) False ssuh2rs1

Expression Profile