RNA id: XM_034306833.1


Basic Information

Item Value
RNA id XM_034306833.1
length 2170
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC113533443
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21338426 ~ 21355283 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCATTCAGACATACTCCAACTAGTTGCCTGCGCACACTCCATATGcaaacacaaaatatatttttttaaatatctgactGTTCATCGAGAACTTTGACATCAAGAACATTCCCAGTGAGCGGCTGAGCCTCATGATTTCAGGGGGAGATTGGCCTCTGAACCAAGACCATAAGACCACATTGCAGCATTTTGGCTTCTTCCTCAGGGCTTCTAGGAAGTGACACTTTAGCACTTTGTGTGCAATCTGGTTGGACTCAAGAAAAAGTTAGTCAAAAATGAGGATAAGAACATATCCAAAAGCACACATTCTGCAGAAGTTCCATACGCATTGTCAGTCTCTTGCGGCCAATGGCAATGCAGGATATCAAAGGGAATTTGAGGAGCTGAGTGACACTGCAAAGGAGTTCTCATGCAGGGCTGGAGAGCTGGATGCcaataaagacaaaaacagatATCCTTTCATTTTACCCTatgACCACTGCAGAGTTAAGCTGTCTTTATTAGAGTCACAGCCACACTCAGACTACATCAATGCCAGCTATGTGCCTGGTGGCTGTACAGAACATGACTTCATCTGTACTCAGGCTCCTTTGCCATCAACCATGGCTGATTTCTGGCGGATGATCTGGGAGCAAAATGTGCAGGTTATCGTCATGGTGACAGCACTAAAAGAGAGGGCAAGGTGTGAAAACAGACCAGTGCTATGTAATCAGTACTGGCCTCCTGAGAAAGGCACTGGCTGTTATGGGGCTCTGCAAGTCACCACCGTTTCCCGTCATCATGGTCCAGACTGCTACATCACCACCATCCACCTACGACAGCATAACAACCATACAGGTAGACAAATAACGCATTATTACTACCCTGGCTGGCCTGATCAGGGTGTTCCAAAGGACCACACCTCTCTTGTCAACTTCACTGAGCATGTACGGAAGCAGCTGGATGACACTCCACGCTTAGGCTCCACAGTTGTTCACTGCAGtGCAGGCATAGGTCGCTCTGGAACATTTGTAGCAATACTTTGGTTGATGCAGCTCTGTGCAAGGGGGATTCCACCTGATGTACATCTCGCCGTCCGAGACCTGCGCAGACACAGAGTGTTGATGGTGCAAAATGTGgAGCAATACATACTTGTGCATCAGTGTCTACTTCACTGGCTAGGTGGGAAAATGGAGAGACCAAGAACCCAGAATGCTGTGGTGCATTTCAAGACAGCacagccacaaacacacaggcaaTCCAGAAAGGACTGGAAAAACCGGAGGAGAAACTCTGACCATACACACCGCCCTGAGTCCACTCATTCCTCTGTTCAAGTgtcacacacaccccaccctCAGCGCACAGCATGGCAATCCCTACGGGAATCCCTGCACACTTTTAACCCTGGAAAACTCCTGCAGAGGATAATACCTCCGTCTTCTCAACTCGGCTCACACacccaacacaacacacacgttTAGGGTAGATACACAAACAGATACTCACAAGCAATACATACAGTGGTCTATTATTAGTGTAATTGTTAGAATAGTGTTCAATAGCTAGCTGAATTGCTGAGTTTTGTCTCAGAATGTGTCAAAGAAATATGGCTCATATTTAGTGCTGAGCAAGGATTTCAGCTTGTGTGCAGTAACCAAGATAAACAACAACGGCTGCTCAACTTGTTTCACCTGAAAGTCATGGCAAATAGTTAGCTGTTAACCAGAAGGTAGGATAAACAAAATAAGCTTATGTAGGTATGAAACTTTGTCACATTTTAGATTTCACACCATACTTTAAAACAATATGTacaccattttttatttttacagtgtcttgcataatTCACCATCCTTAACACCTCATCTGCAATTAGAGCTGCACGTTTTTTGGGAGTCTCCACCATTTTTGGCCATTTTTCTTGCCAGTATTGCTTATAAAAAATCGGATTTAGGTCTGGGCTTTTGCTGAACAACATACATGTGAAGCAGAATTTTTCACACAACAAAAACTTCAGTTTCAGCCTCAACCAAGAATGTAAAATTGTTAGTCAAGGCGAAGTAGTGAGGGTTCCTCCTAACATGCTGGTGCTAaataagtgaagtgacttgcggccaagtatggtgacccatactcggaatttgtgctctgcatttaacccatccaagtgcacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160650 lncRNA upstream 372958 20947304 ~ 20965468 (+) False G136056
TU160651 lncRNA upstream 372958 20956374 ~ 20965468 (+) True G136056
TU160652 lncRNA upstream 399356 20937123 ~ 20939070 (+) True G136057
TU160256 lncRNA upstream 1152880 20180793 ~ 20185546 (+) False LOC113533164
TU160221 lncRNA upstream 1323656 20014522 ~ 20014770 (+) True G135643
TU161109 lncRNA downstream 5556 21360839 ~ 21361880 (+) True G136433
TU161152 lncRNA downstream 319575 21674858 ~ 21687429 (+) False G136466
TU161153 lncRNA downstream 319575 21674858 ~ 21693702 (+) True G136466
TU161219 lncRNA downstream 441993 21797276 ~ 21797808 (+) False LOC113533123
TU161220 lncRNA downstream 441993 21797276 ~ 21797689 (+) False LOC113533123
XM_026925133.2 mRNA upstream 24254 21276687 ~ 21314172 (+) True prickle2a
XM_034306363.1 mRNA upstream 87801 21223634 ~ 21250625 (+) True LOC113533151
XM_034306364.1 mRNA upstream 87801 21223634 ~ 21250625 (+) False LOC113533151
XM_034306372.1 mRNA upstream 152502 21075827 ~ 21185924 (+) True LOC113533118
XM_026925859.2 mRNA upstream 278126 21034464 ~ 21060300 (+) True gabrd
XM_026925485.2 mRNA downstream 13523 21368806 ~ 21394676 (+) True nadka
XM_034306716.1 mRNA downstream 13523 21368806 ~ 21394676 (+) False nadka
XM_034306717.1 mRNA downstream 28248 21383531 ~ 21394676 (+) False nadka
XM_026925521.2 mRNA downstream 61609 21416892 ~ 21433503 (+) False LOC113533389
XM_026925520.2 mRNA downstream 61611 21416894 ~ 21435953 (+) True LOC113533389
TU160573 other upstream 590570 20744639 ~ 20747856 (+) True selenok
trnae-cuc_20 other upstream 605955 20732400 ~ 20732471 (+) True trnae-cuc_20
XR_004578534.1 other upstream 896235 20222415 ~ 20442191 (+) False LOC113533440
trnaa-ugc_2 other downstream 332841 21688124 ~ 21688195 (+) True trnaa-ugc_2
trnaa-ugc_3 other downstream 333237 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnat-cgu_3 other downstream 334384 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_4 other downstream 334742 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnaa-ugc_5 other downstream 335138 21690421 ~ 21690492 (+) True trnaa-ugc_5

Expression Profile