RNA id: XM_034306842.1


Basic Information

Item Value
RNA id XM_034306842.1
length 2530
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC117597849
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28005083 ~ 28015288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTCCTCTGGAGTGACAGAtacttctcctctctctctctctctctctctctctctttagtttTAGATCTTCTATGACTTATGAGATGCGTATGCCCTCGAGCCATGCAACATCCGAGTGACGGCATTCCCTGCAGTCGGAGCTGTACCTCCATGTTATGGTCCTTCTCTGCACTTTTCACAGAAGAGGCCTTGCAGGGTCAGGAATGCCGTCCTCAGTTACTCAGAAGAATGGGTCACTCATGGCATGTGGAAAGAGGTGTGTTCTGTCCCTGAGACCTGAGCGCTGTGGcaataaagctgaaaatgagAAATCCAAAGAAGCtgaagagagcgagagagaagaGAGCACCGCTAACAGAATCGTGGATGAACACAGGAAAGCAGgcgaggagaaaaagagagcacAGAGCGGTGTAGTGAGGACGAGAGTGATGGTGACGTCGGACGCTCGACCCTCCACTGCTCCGGCACACACTCTGGCAGGACGGAGTGACGTTAATCCGCTCTCACCAGgaactcCAGGTTACAGGATGGTGTGGAGAACCAGTGAAAATGGACACCATGACACTCTGGATTGCACCTCGACTGGAACTCCTGTTCTTCACCTCTATCTGCCCAACTACCACACTGACACCAGgaaagaaatggacgaggTGTTGGACGttgaggcagacagacaggatgCTGACACGGATCGAAAAAACAGGGAGATTCAAATTCAAGAACAGCTTGATGTGTGGAATGATGGAAATAGAAACTGTGACGTTACTGGAGGAAACAGACCACCTGATGACGTGGAAGACGTCATTACAGTGGAGACAGGAAGTGAGCAAAATCATAAGATGGAAGAAGATGACAAAGATGGCGAAAGACAACGAGGCAGCCGGAATGAGCGTATTGAAAAAGAAGAGAATGAACAACACGGTGTAAGAGAGAATAGTTGTGACATCAGCCAGGAACCGAGCGAGGAACGTAGCTCCGTAGAAGAAGAGGGACGTTCTGGAAAGTCAGATGATACACCTCAACCCACGGCAGCAGCACATCAGCATGTTTTagaggaaagacagaaaacagcAGCTACAAAGCTAAAATCTGGAGCTGCTCATGTCAGAAACTCAGAAACCAAGATGACGAGGAGGCTGACTCTCCCAGCGCCGGCTTTATCGTTCCCCGGCCCACCCGCAcgcacacactcttcaccctcgcCATGTGTGCTGCCGTCGTTTTACGGCTCCTCGTTTGGCCATCGCATCAGAACGCCTCATACGCCCGAACGCCACCGGGCCAAAACACGGCCCACTGAAATCGACTTTGACAAAAGAGCCATAAAACCTGCGACTGAAAGACCCCCGAGCTTGGAGTGGAGAGGAAGTCGGCACGTCTCGAAAATGGACTCCAGTGGAATAACCGGTCCCCGCCCTAAAATAACGAGCTCTGAGTGGTGGGGGTCTCTGTCTCGTAAAACCAAAACCACCAAGACGTTCGTGTGGGGGCCTCGGGGGCCTCAGGAGaccaagagtgtgtgtgagctacaCACTCGAACCAACAGGTGGAGGGGTTTGGACTGATGCCGAGGTTTGGCTGAACACAGACCCACAAACATGTTTGCGTTATCCTTATTGCCATGTTCTGGtttattagtgtgtttatggtagctgtgttaattcaacatttatggtagttaattaaaagtacatttgtcatgcattaacattaataatgaatagGTGTAGGGTTGCCAAGGTcgtgatttttacacatacaAAGCTGCAGGTGGAAAAGCCgttttttgggctagtttaaaaatgacaaagatcttgttttaaagcaaatgtttacaaataaatcaagtcaaatcaatcaataaatcaaataaatcactCTCCACAAACATAGGCTATgacaaacaaagggaaagtgtaagagCAAAGTGACAGCGTGTCGATGATGTCCAGAAGCATTTCTGTGGCAAAGATTAGGACAAGGAAAGGGAGATTAcggagtggataatgtctgtactAGTTAATGATTAAACTTCGTATTGCTGATAATGCAAATgagaaatgcgtgcgcaccacagTGACCCTGTTTCACATgcaaaaggctgagaaaaagaagaaaaatgtgtttcccTTTAACAACGGGTGAACTTTTTGGGTTactttcaggtcttttgtgtggtttttgaaattttgctgagatctggcaaccctgaacaGGGTGTAATATTGGTGCACATTGATTCGTAATGAAAAATCGTTTCTGCGAGACTTGCGGCTATAAGACAGAAATCTTGCTGATGGAGAGAGCTAAAGTTTTATCTTCTATGTTATACGCTAAATGTCAATGTTAACAGTGAAAATCCCGCAGGAGCGCTAGCTGAAATTAACGTTGCAGAAAGCTGCCGTGagcaaatgattaaaaaaaggtcaTTTAAGAGAATTACACACTGCTATAATGAGGAAATTAAACAGAAAGTACAAAGGGATGTAGGAATTTTGCAGAAgtcttttttcctaaaatgaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165680 lncRNA upstream 62996 27930723 ~ 27942087 (+) True G140244
TU165672 lncRNA upstream 69265 27931210 ~ 27935818 (+) True G140240
TU165687 lncRNA upstream 145382 27843894 ~ 27859701 (+) False dbnlb
TU165668 lncRNA upstream 153751 27774737 ~ 27851332 (+) True G140237
TU165666 lncRNA upstream 231439 27772444 ~ 27773644 (+) True G140236
TU165678 lncRNA downstream 3955 28019243 ~ 28021396 (+) False arpc5la
TU165760 lncRNA downstream 109318 28124606 ~ 28124811 (+) True G140307
TU165764 lncRNA downstream 121323 28136611 ~ 28136832 (+) True G140311
TU165771 lncRNA downstream 140420 28155708 ~ 28155911 (+) True G140318
TU165781 lncRNA downstream 156300 28171588 ~ 28171793 (+) True G140328
XM_026945902.2 mRNA upstream 22000 27954282 ~ 27983083 (+) True olfml2a
XM_034306513.1 mRNA upstream 71854 27926636 ~ 27933229 (+) True polr3d
XM_034306514.1 mRNA upstream 71854 27926636 ~ 27933229 (+) False polr3d
XM_034306515.1 mRNA upstream 71854 27926636 ~ 27933229 (+) False polr3d
XM_034306265.1 mRNA upstream 100451 27898573 ~ 27904632 (+) True gins4
XM_026945903.2 mRNA downstream 3896 28019184 ~ 28027450 (+) True arpc5la
XM_026945918.2 mRNA downstream 38900 28054188 ~ 28090793 (+) True si:ch211-158d24.2
XM_026945919.2 mRNA downstream 87901 28103189 ~ 28110098 (+) True LOC113546156
XM_034306290.1 mRNA downstream 181568 28196856 ~ 28413159 (+) True si:dkeyp-14d3.1
XM_034306292.1 mRNA downstream 288067 28303355 ~ 28413159 (+) False si:dkeyp-14d3.1
TU165116 other upstream 575606 27428727 ~ 27429477 (+) True G139781
XR_003404685.2 other upstream 1275252 26626053 ~ 26729831 (+) False rimbp2
TU164841 other upstream 1438320 26563235 ~ 26566763 (+) False LOC117597788
trnaa-agc_2 other upstream 1527624 26477387 ~ 26477459 (+) True trnaa-agc_2
trnaa-agc_1 other upstream 1528206 26476805 ~ 26476877 (+) True trnaa-agc_1
XR_004578633.1 other downstream 4183 28019471 ~ 28027450 (+) False arpc5la
trnag-ccc_1 other downstream 1472685 29487973 ~ 29488043 (+) True trnag-ccc_1
trnar-ucg_2 other downstream 1473261 29488549 ~ 29488621 (+) True trnar-ucg_2
trnar-ucg_3 other downstream 1474054 29489342 ~ 29489414 (+) True trnar-ucg_3
trnag-ccc_2 other downstream 1474232 29489520 ~ 29489590 (+) True trnag-ccc_2

Expression Profile