RNA id: XM_034306843.1


Basic Information

Item Value
RNA id XM_034306843.1
length 1838
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC113533433
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22163978 ~ 22170747 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATATACCAGTATTATCCACATTACAAtgaattatttgattattttttgactattaactgaattttttaaattgccaAGAGTCACAGCTTTAGTGTCCTTCTCTAGGGTAATAAAGTTCATTGGAGAGGTTGGGCATTAACAGAATGCAAACTTTATGTGTCATGTTTGGACAAATCTGTGGTAGGAGTGAGAGTGAGATCTGTGGTGATAAGTAAAAGAGTAGTGTGAGAAAAGCAGTACCACTTATTTCATAATGGAAGGACTTAATCTTTCTTCGATCAACCAGTCAACCAGTCGACCAGAACTGATTGATTTTGAAGGCATTTCTATGGTCCGTTACTTCACTGATGAATGGGAAAAGGTTCAGAAATTTCAAGCGAGACCAGATGATATCCTCATTGCTACTTACCCCAAAGCAGGCACCACTTGGGTCTCCTACATTTTGGAGCTACTCTATTTTCACAATACATTGCCAGAGAGTCAGACCTCACTGCCCATCTTCATAAGAGTGCCTTTCCTTGAGGCAGTCTTTCCTGAGATGCCTACAGGGGTTGAACTGGCAGATAAATTGCCCACCACACCACGGCTCATCAAAACTCATCTACCTGTTCAGTTGGTGCCCAAGTCCTTCTGGGAACAGAACTGCAAGGTTATTTATGTAGCTCGCAATGCCAAAGACAATGCGGTGTCTTATTTCCACTTTTCTCGCATGGTCAACTTACTACCTGAGCCAGGAAACTGGAATACTTTCTTACAGAATTTCATGGATGAAAAGATGGTGTTTGGACCTTGGTATGATCATGTGTCTGGCTACTGGGAGAAGAAGCAGACATACTCTAATCTTCACTACATGTTCTTTGAAGACATGGTAGAGaacactgggcgtgaggtggaGCAATTGTGCTCCTTCCTTGGTTTATCTACACCAgcagaagagaaggaaagaattACAAAAGGCGTTCACTTTGATGCTATGAAGCAGAATGACATGACCAACTATTCTACATTCTCACACATGGACTTCAAGATCTCACCATTCATGCGCAAAGGGAAAGTTGGAGACTGGAAGAATCACTTCACTGTGGCTCAAAATGAGCAGTTTGATGAACACTACTGGCGGAAGATGAAGAACACAACCTTACAGTTCCACACAGAGATTTAGGACAGCAAtataatttacagtatattacacaGCAGTTTAGTCAAGATTATTTTGTCTGCATGTGCTGTACATAATCAGTAAAAGGCATACTGAAAGgaataatgtgatttttttccccaagataTCAATTCAAATAAAACTATTTGAGAATTGTTCATTACATCTGATTGAAGCAACTCTGTTCTTAGAACCTCTCAGATATTAAATATGTACAGATCAGTAACAGATCAGCAATGTATTCAATCCTAGAATATGACTAAACTGcccttatttatataaaatgtttagtgcTCTAGAAAAAAAGTGGAATGTCACAAGCATGCTCAAACAATAATCAAATTCCTTACTCAATTGTTcttgtcatgttcatgttttaaaagaaaaacaatgctTGATGAGTAAGCTGTTATGCTGTTATGTTATATGAATCTAGATCCAACCTGTATGAGCATTTGTGCCTGAGATCCTGTGATGGTGATACACTTTTCTTAGTGTTTCGTTATACATGTTGCTGGTGCCCAGATGTCTTACTCTGTGATCATTTGGTGATAAAGTCATGGGTAGGCGCAAACGAATACACTGTTCAGACTTACACTCTCAAGAGAAGTCTCCTTTCTTGGGCTTTCCTGTATGTGTGACCAGAATGGAGTGAAATAAAGCAGAACTTAAGGGA

Function

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161800 lncRNA upstream 14201 22148623 ~ 22149777 (+) True G137017
TU161753 lncRNA upstream 40227 22092595 ~ 22123751 (+) False LOC113533283
TU161242 lncRNA upstream 304310 21843187 ~ 21859668 (+) False LOC113533434
TU161246 lncRNA upstream 324126 21839632 ~ 21839852 (+) True G136544
TU161232 lncRNA upstream 338656 21824989 ~ 21825322 (+) True G136532
TU161862 lncRNA downstream 133982 22304729 ~ 22307615 (+) True G137057
TU161897 lncRNA downstream 296020 22466767 ~ 22467029 (+) True G137086
TU161898 lncRNA downstream 297887 22468634 ~ 22468839 (+) True G137087
TU161899 lncRNA downstream 300294 22471041 ~ 22471330 (+) True G137088
TU162067 lncRNA downstream 338464 22509211 ~ 22509494 (+) False LOC113533405
XM_026925928.2 mRNA upstream 15645 22145089 ~ 22148333 (+) True b3galt4
XM_026925929.2 mRNA upstream 15645 22145089 ~ 22148333 (+) False b3galt4
XM_026925328.2 mRNA upstream 40648 22110746 ~ 22123330 (+) False LOC113533283
XM_026925368.2 mRNA downstream 3382 22174129 ~ 22181491 (+) True LOC113533311
XM_026925196.2 mRNA downstream 17073 22187820 ~ 22194724 (+) True LOC113533223
XM_026925194.2 mRNA downstream 26002 22196749 ~ 22205160 (+) True LOC113533222
XM_026925195.2 mRNA downstream 26002 22196749 ~ 22205160 (+) False LOC113533222
XM_026925197.2 mRNA downstream 35130 22205877 ~ 22212021 (+) True LOC113533224
trnaa-ugc_5 other upstream 473486 21690421 ~ 21690492 (+) True trnaa-ugc_5
trnaa-ugc_4 other upstream 473882 21690025 ~ 21690096 (+) True trnaa-ugc_4
trnat-cgu_3 other upstream 474240 21689667 ~ 21689738 (+) True trnat-cgu_3
trnaa-ugc_3 other upstream 475387 21688520 ~ 21688591 (+) True trnaa-ugc_3
trnaa-ugc_2 other upstream 475783 21688124 ~ 21688195 (+) True trnaa-ugc_2
XR_004578647.1 other downstream 1077601 23248348 ~ 23259453 (+) False tprg1l
XR_004578528.1 other downstream 1343839 23514586 ~ 23523976 (+) False pabpc1l
TU162995 other downstream 1579670 23750417 ~ 23757114 (+) True G138010
TU163200 other downstream 1840870 24011617 ~ 24013726 (+) False fkbp1aa
TU163201 other downstream 1840870 24011617 ~ 24013726 (+) False fkbp1aa

Expression Profile